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The map label for this gene is psb28 [H]

Identifier: 113476038

GI number: 113476038

Start: 3716210

End: 3716572

Strand: Reverse

Name: psb28 [H]

Synonym: Tery_2408

Alternate gene names: 113476038

Gene position: 3716572-3716210 (Counterclockwise)

Preceding gene: 113476039

Following gene: 113476037

Centisome position: 47.96

GC content: 38.29

Gene sequence:

>363_bases
ATGACTACAATTGACAAAAAGTTGACTACAATTCAGTTTATTCAAGGAATAGATGAAGAAGTAACACCAGAAGTGCGTCT
AACTCGTTCTCGTAGTGGTAACCAGGGAACAGCTACATTGATTTTTGAAGATCCCAAGGCTTTAGGCCAAGATGTTACTC
AAGAAATTACAGGGATGTATATGATTGATGAAGAAGGCCAAATAACTAGTCGTGACGTTAAGGCCAGATTTGTTAATGGT
CAGCCTAAATTCCTTGAGGGACTTTATGTTATGAAGACTAAGCAAGAATGGGAGCGTTTTATGCGCTTTATGGAGAGTTA
TGCTAAAGAGCATGACTTAGGATTTAAAAAGGCTAAGGCTTGA

Upstream 100 bases:

>100_bases
AAATTAAAAGTAGAGGTTCTTGTAAATCTAGGGTTATAGAAGAGAGTTTTTCTGTTTATAATAATATTTTAATGATTTGT
TAAGGATTACAAAAATACTA

Downstream 100 bases:

>100_bases
TAAGTTCCCCAGGCTAGCAAATTTTGAGCAATTTTGAGCCTGGGAATATCTAGCTACTTCTATAGACTTTTGCAAAGCAG
AGAACAAATAACTCACCGTT

Product: photosystem II reaction center protein Psb28

Products: NA

Alternate protein names: Photosystem II 13 kDa protein; Photosystem II reaction center W protein [H]

Number of amino acids: Translated: 120; Mature: 119

Protein sequence:

>120_residues
MTTIDKKLTTIQFIQGIDEEVTPEVRLTRSRSGNQGTATLIFEDPKALGQDVTQEITGMYMIDEEGQITSRDVKARFVNG
QPKFLEGLYVMKTKQEWERFMRFMESYAKEHDLGFKKAKA

Sequences:

>Translated_120_residues
MTTIDKKLTTIQFIQGIDEEVTPEVRLTRSRSGNQGTATLIFEDPKALGQDVTQEITGMYMIDEEGQITSRDVKARFVNG
QPKFLEGLYVMKTKQEWERFMRFMESYAKEHDLGFKKAKA
>Mature_119_residues
TTIDKKLTTIQFIQGIDEEVTPEVRLTRSRSGNQGTATLIFEDPKALGQDVTQEITGMYMIDEEGQITSRDVKARFVNGQ
PKFLEGLYVMKTKQEWERFMRFMESYAKEHDLGFKKAKA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psb28 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005610
- ProDom:   PD012692 [H]

Pfam domain/function: PF03912 Psb28 [H]

EC number: NA

Molecular weight: Translated: 13845; Mature: 13714

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTIDKKLTTIQFIQGIDEEVTPEVRLTRSRSGNQGTATLIFEDPKALGQDVTQEITGMY
CCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECHHHHHHHHHHHHHCEE
MIDEEGQITSRDVKARFVNGQPKFLEGLYVMKTKQEWERFMRFMESYAKEHDLGFKKAKA
EECCCCCCCCCCEEEEEECCCCHHHHCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TTIDKKLTTIQFIQGIDEEVTPEVRLTRSRSGNQGTATLIFEDPKALGQDVTQEITGMY
CCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECHHHHHHHHHHHHHCEE
MIDEEGQITSRDVKARFVNGQPKFLEGLYVMKTKQEWERFMRFMESYAKEHDLGFKKAKA
EECCCCCCCCCCEEEEEECCCCHHHHCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA