Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113476024
Identifier: 113476024
GI number: 113476024
Start: 3698168
End: 3699247
Strand: Reverse
Name: 113476024
Synonym: Tery_2394
Alternate gene names: NA
Gene position: 3699247-3698168 (Counterclockwise)
Preceding gene: 113476026
Following gene: 113476020
Centisome position: 47.73
GC content: 34.81
Gene sequence:
>1080_bases GTGAAATCAATAAATGAATTTTCAGGCATAGATATGGCCCAAGAACAGGATCAAGAGACTAATAATACTAATACTTTAGC TGTGACAGATACGAAACCATTAAATTTTGCTAAATCTAACTACGAGGAAGAAACTACAACTAATACTCTGACTCATAATA TTACCACTGTACGACAACATCCAATTGCTCCCCCTAGCGAACCCCAACAGTACCGGGCCATAGGTTTAGTTCGAGGTCGT TATCAACCTTCTACAGAACAATTTACACGAGGTAGCCTACGAACACCAGATGATTCAGAAATAGATGCTGTATTGTTAGG CCGGGTAATGAGTCTATTAAAAAATCATTTAGATCTAGAGTCAGATCATCTCTGGGTAGTTTATCCTCGTACCAGACAAG AAAATAATGACCTACATATTCAAATTATGGGGGTATGGGAACCAGAAACTCTAGGAACCAAGGCAAAATTCTCTACTGAA TTAACAAATGAAGAACAGCAACAAACAACTTCATCTCTAAGTATTTCTCCCACCGTTGAAGATAACCAAAGTCAAGAAAT ACCAGAAGTATCAGAAAATATAGATAATTCTCAACCAAGTACTGTTTTTCCTAGTCCGGAAACTGAGATAGATGATTTAG TTACTTTAGGTGATGGTTATTTTTCTATTCGAGGAGAAGTGATTTATCAATCTCAAGAGGAAGAATATGTAGTAGTTAAG GTACAACAATTAGCCCGCAAAGGTGAAGAAACTTCTAAGTTTTTTAAGCTGAAACTTAAAGGGAATTTAGGCGATCGCCC ATTGAATCATTTCTGGGATTTACATATTCAGCGCCAGAATACATCTCTTGTTATTCAATATGCTAATGATATTGGTAGTC TGTTTTTAAATAATCGTCGCCAATTTATATCAAAGGACAAAAGAACATTTAATAATAGAGATAATTATAGAAAAAGTAGT TATTCACAAGGGTTTTCTCACAAAAGTGATAATTATGTAACAAGTTCAATTCCTATTCGTAAAGAACCTCTTCCTAAACC AATTAAAAGAAATCAAAACTCAAGTGAGCAAGGGAATTAA
Upstream 100 bases:
>100_bases AACAGATCACAAGGCCTATCCCAATGAGCAAGCTATTAATAAACCAGATATTAAGCAAAGTCTTCCTAGAAAAACTAATG CTTTAAGTTATGATACCTCT
Downstream 100 bases:
>100_bases TTTTTTCAGTAAAGTTTAGGAAAATGCCGGTTTTTTTTGTGGAGAACTTAACGTTCCAGAAATGGTAAGAAAGTTCGATC CATCGGAAGTTGAGCAACTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 359; Mature: 359
Protein sequence:
>359_residues MKSINEFSGIDMAQEQDQETNNTNTLAVTDTKPLNFAKSNYEEETTTNTLTHNITTVRQHPIAPPSEPQQYRAIGLVRGR YQPSTEQFTRGSLRTPDDSEIDAVLLGRVMSLLKNHLDLESDHLWVVYPRTRQENNDLHIQIMGVWEPETLGTKAKFSTE LTNEEQQQTTSSLSISPTVEDNQSQEIPEVSENIDNSQPSTVFPSPETEIDDLVTLGDGYFSIRGEVIYQSQEEEYVVVK VQQLARKGEETSKFFKLKLKGNLGDRPLNHFWDLHIQRQNTSLVIQYANDIGSLFLNNRRQFISKDKRTFNNRDNYRKSS YSQGFSHKSDNYVTSSIPIRKEPLPKPIKRNQNSSEQGN
Sequences:
>Translated_359_residues MKSINEFSGIDMAQEQDQETNNTNTLAVTDTKPLNFAKSNYEEETTTNTLTHNITTVRQHPIAPPSEPQQYRAIGLVRGR YQPSTEQFTRGSLRTPDDSEIDAVLLGRVMSLLKNHLDLESDHLWVVYPRTRQENNDLHIQIMGVWEPETLGTKAKFSTE LTNEEQQQTTSSLSISPTVEDNQSQEIPEVSENIDNSQPSTVFPSPETEIDDLVTLGDGYFSIRGEVIYQSQEEEYVVVK VQQLARKGEETSKFFKLKLKGNLGDRPLNHFWDLHIQRQNTSLVIQYANDIGSLFLNNRRQFISKDKRTFNNRDNYRKSS YSQGFSHKSDNYVTSSIPIRKEPLPKPIKRNQNSSEQGN >Mature_359_residues MKSINEFSGIDMAQEQDQETNNTNTLAVTDTKPLNFAKSNYEEETTTNTLTHNITTVRQHPIAPPSEPQQYRAIGLVRGR YQPSTEQFTRGSLRTPDDSEIDAVLLGRVMSLLKNHLDLESDHLWVVYPRTRQENNDLHIQIMGVWEPETLGTKAKFSTE LTNEEQQQTTSSLSISPTVEDNQSQEIPEVSENIDNSQPSTVFPSPETEIDDLVTLGDGYFSIRGEVIYQSQEEEYVVVK VQQLARKGEETSKFFKLKLKGNLGDRPLNHFWDLHIQRQNTSLVIQYANDIGSLFLNNRRQFISKDKRTFNNRDNYRKSS YSQGFSHKSDNYVTSSIPIRKEPLPKPIKRNQNSSEQGN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41116; Mature: 41116
Theoretical pI: Translated: 5.18; Mature: 5.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSINEFSGIDMAQEQDQETNNTNTLAVTDTKPLNFAKSNYEEETTTNTLTHNITTVRQH CCCCCHHCCCCCHHHHHHCCCCCCEEEEECCCCCCHHHCCCCCHHCCCHHEECEEEHHCC PIAPPSEPQQYRAIGLVRGRYQPSTEQFTRGSLRTPDDSEIDAVLLGRVMSLLKNHLDLE CCCCCCCCHHHHHEEEEECCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC SDHLWVVYPRTRQENNDLHIQIMGVWEPETLGTKAKFSTELTNEEQQQTTSSLSISPTVE CCCEEEEEECCCCCCCCEEEEEEEEECCHHCCCCCEECHHHCCHHHHHHHHCEEECCCCC DNQSQEIPEVSENIDNSQPSTVFPSPETEIDDLVTLGDGYFSIRGEVIYQSQEEEYVVVK CCCCCCCCHHHHHCCCCCCCEECCCCCCCHHHEEEECCCEEEEEEEEEEECCCCCEEEEE VQQLARKGEETSKFFKLKLKGNLGDRPLNHFWDLHIQRQNTSLVIQYANDIGSLFLNNRR HHHHHHCCCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCEEEEEEHHHHHHHHHHCHH QFISKDKRTFNNRDNYRKSSYSQGFSHKSDNYVTSSIPIRKEPLPKPIKRNQNSSEQGN HHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCC >Mature Secondary Structure MKSINEFSGIDMAQEQDQETNNTNTLAVTDTKPLNFAKSNYEEETTTNTLTHNITTVRQH CCCCCHHCCCCCHHHHHHCCCCCCEEEEECCCCCCHHHCCCCCHHCCCHHEECEEEHHCC PIAPPSEPQQYRAIGLVRGRYQPSTEQFTRGSLRTPDDSEIDAVLLGRVMSLLKNHLDLE CCCCCCCCHHHHHEEEEECCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC SDHLWVVYPRTRQENNDLHIQIMGVWEPETLGTKAKFSTELTNEEQQQTTSSLSISPTVE CCCEEEEEECCCCCCCCEEEEEEEEECCHHCCCCCEECHHHCCHHHHHHHHCEEECCCCC DNQSQEIPEVSENIDNSQPSTVFPSPETEIDDLVTLGDGYFSIRGEVIYQSQEEEYVVVK CCCCCCCCHHHHHCCCCCCCEECCCCCCCHHHEEEECCCEEEEEEEEEEECCCCCEEEEE VQQLARKGEETSKFFKLKLKGNLGDRPLNHFWDLHIQRQNTSLVIQYANDIGSLFLNNRR HHHHHHCCCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCEEEEEEHHHHHHHHHHCHH QFISKDKRTFNNRDNYRKSSYSQGFSHKSDNYVTSSIPIRKEPLPKPIKRNQNSSEQGN HHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA