Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113475982
Identifier: 113475982
GI number: 113475982
Start: 3631292
End: 3631852
Strand: Reverse
Name: 113475982
Synonym: Tery_2350
Alternate gene names: NA
Gene position: 3631852-3631292 (Counterclockwise)
Preceding gene: 113475983
Following gene: 113475981
Centisome position: 46.86
GC content: 35.12
Gene sequence:
>561_bases ATGAATTTTAAATTTGTCCAACGATGGGCAACTATTAGTTGTTTTAGTTTGGCTGTAATTTTTGGTCTAACTCACCATAG TCGGGCTCAACAAAATGGTGGCTTGGCTAGTTTCTACTGTGGTACTGATAATGGTAAGTCTGCTACTATTGCAGACCATC CCATTCGGGGGAAAATAACTCTCATTATTTGGGAAAGTAATTATTTCATTAATGCTGGATATGATCCCCAGAAGCGTTGC CGTATAATTTCTAATAGATTTAATCGTTTTCAAAGTATAGGAAGTTTGAGGAAAATTGTTCCTAGTCGTACAAATAACTT ACCTGTATTATGTGCTCTTTCTAGTCTAGATGGCTATACTGGTAGCTGTCCTAATACTAATGTTTTGATGACTCTTAAAC CTGGTGATAATGCTCAAGAAATGGTTAATCAAATGGGTGAATTAAATCTCAAAGATTCTGTTGAGCCTCTGAGACATTCA GCTACTATTTTTGAACAATATGGGGATATTAAGGTTCTTGATATTAATTCAATGTTGCGGTATTCTTCACCTACTAAATA A
Upstream 100 bases:
>100_bases GCAGAATACTACAAAAAATTTAAAGCTATATTCCAAATAGCAACTCAAGGAAAAATTTGACTATAATTACTATATCTTTG TTGGTAAAGGAGTGCTATGT
Downstream 100 bases:
>100_bases TTTCTGGCAACTTACCTAATTTAATGGTATTTTTCTGCTCTCCCTAAGTCTTTATCTGAAAGGGGGACTTTTTTTTGATT CTCCTTTTTTTTATCCCAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 186; Mature: 186
Protein sequence:
>186_residues MNFKFVQRWATISCFSLAVIFGLTHHSRAQQNGGLASFYCGTDNGKSATIADHPIRGKITLIIWESNYFINAGYDPQKRC RIISNRFNRFQSIGSLRKIVPSRTNNLPVLCALSSLDGYTGSCPNTNVLMTLKPGDNAQEMVNQMGELNLKDSVEPLRHS ATIFEQYGDIKVLDINSMLRYSSPTK
Sequences:
>Translated_186_residues MNFKFVQRWATISCFSLAVIFGLTHHSRAQQNGGLASFYCGTDNGKSATIADHPIRGKITLIIWESNYFINAGYDPQKRC RIISNRFNRFQSIGSLRKIVPSRTNNLPVLCALSSLDGYTGSCPNTNVLMTLKPGDNAQEMVNQMGELNLKDSVEPLRHS ATIFEQYGDIKVLDINSMLRYSSPTK >Mature_186_residues MNFKFVQRWATISCFSLAVIFGLTHHSRAQQNGGLASFYCGTDNGKSATIADHPIRGKITLIIWESNYFINAGYDPQKRC RIISNRFNRFQSIGSLRKIVPSRTNNLPVLCALSSLDGYTGSCPNTNVLMTLKPGDNAQEMVNQMGELNLKDSVEPLRHS ATIFEQYGDIKVLDINSMLRYSSPTK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20799; Mature: 20799
Theoretical pI: Translated: 9.48; Mature: 9.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNFKFVQRWATISCFSLAVIFGLTHHSRAQQNGGLASFYCGTDNGKSATIADHPIRGKIT CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCEEEEEECCCCCCEEEEECCCCCCEEE LIIWESNYFINAGYDPQKRCRIISNRFNRFQSIGSLRKIVPSRTNNLPVLCALSSLDGYT EEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCC GSCPNTNVLMTLKPGDNAQEMVNQMGELNLKDSVEPLRHSATIFEQYGDIKVLDINSMLR CCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEHHHHHC YSSPTK CCCCCC >Mature Secondary Structure MNFKFVQRWATISCFSLAVIFGLTHHSRAQQNGGLASFYCGTDNGKSATIADHPIRGKIT CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCEEEEEECCCCCCEEEEECCCCCCEEE LIIWESNYFINAGYDPQKRCRIISNRFNRFQSIGSLRKIVPSRTNNLPVLCALSSLDGYT EEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCC GSCPNTNVLMTLKPGDNAQEMVNQMGELNLKDSVEPLRHSATIFEQYGDIKVLDINSMLR CCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEHHHHHC YSSPTK CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA