| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475881
Identifier: 113475881
GI number: 113475881
Start: 3486880
End: 3487341
Strand: Reverse
Name: 113475881
Synonym: Tery_2240
Alternate gene names: NA
Gene position: 3487341-3486880 (Counterclockwise)
Preceding gene: 113475883
Following gene: 113475880
Centisome position: 45.0
GC content: 38.53
Gene sequence:
>462_bases ATGACCAACAAAATTGTATCAGAGGTTATGAGTTCTAATCCCATCACCGTCAAACCGAAAACGCCTTTGAAAGAAGCAAT TAAGATCTTGGCAGAAAAACACATTAGTGGTCTTCCTGTAGTCGATGACAACGGAAAGTTAGTTGGTATAGTATCAGAAA CAGATTTAATGTGGCAAGAGAGTGGAGTTACCCCTCCACCTTATATTATGCTGCTAGATAGTATTATCTTCTTAGAAAAT CCAGGGCGTTATGAAAAAGAAATTCATAAAGCTTTAGGAGAAACTGTTGAGGAGATAATGACTAAAAATCCTTTGACTAC TAGATCACAAGAACGACTTTCGGCAACAGCTAAACTTATGAACGAGCGTAGTATTCATCGTTTGCCAGTGGTAGATGAAA ATGGCAAAGTTATTGGTATACTAACCCGTGGTGACATCATTAGAGCTATGGCAGCTGAGTGA
Upstream 100 bases:
>100_bases TGACCTTAATAGAAGCAAAAAGCAAAAGTCAAAATCAAAATTTTGATCATATAACTATAATCATTGCTCAATTATTCAGA AAAAAAAATCAGAGGTAAGT
Downstream 100 bases:
>100_bases GGTGTAATTTGATGGTAAAAAATCAACAGCTGAAGTTTATGCTTTTGAGATCAACTCCGTTGGGATAATATTGGGATGAA AACTTATGCATGAATACAAA
Product: signal transduction protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 153; Mature: 152
Protein sequence:
>153_residues MTNKIVSEVMSSNPITVKPKTPLKEAIKILAEKHISGLPVVDDNGKLVGIVSETDLMWQESGVTPPPYIMLLDSIIFLEN PGRYEKEIHKALGETVEEIMTKNPLTTRSQERLSATAKLMNERSIHRLPVVDENGKVIGILTRGDIIRAMAAE
Sequences:
>Translated_153_residues MTNKIVSEVMSSNPITVKPKTPLKEAIKILAEKHISGLPVVDDNGKLVGIVSETDLMWQESGVTPPPYIMLLDSIIFLEN PGRYEKEIHKALGETVEEIMTKNPLTTRSQERLSATAKLMNERSIHRLPVVDENGKVIGILTRGDIIRAMAAE >Mature_152_residues TNKIVSEVMSSNPITVKPKTPLKEAIKILAEKHISGLPVVDDNGKLVGIVSETDLMWQESGVTPPPYIMLLDSIIFLENP GRYEKEIHKALGETVEEIMTKNPLTTRSQERLSATAKLMNERSIHRLPVVDENGKVIGILTRGDIIRAMAAE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 CBS domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000644 [H]
Pfam domain/function: PF00571 CBS [H]
EC number: NA
Molecular weight: Translated: 16942; Mature: 16811
Theoretical pI: Translated: 6.28; Mature: 6.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNKIVSEVMSSNPITVKPKTPLKEAIKILAEKHISGLPVVDDNGKLVGIVSETDLMWQE CCHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCCEECCCCCEEEEEECCCCEECC SGVTPPPYIMLLDSIIFLENPGRYEKEIHKALGETVEEIMTKNPLTTRSQERLSATAKLM CCCCCCCHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH NERSIHRLPVVDENGKVIGILTRGDIIRAMAAE HCCCCCCCCEECCCCCEEEEEECCHHHHHHCCC >Mature Secondary Structure TNKIVSEVMSSNPITVKPKTPLKEAIKILAEKHISGLPVVDDNGKLVGIVSETDLMWQE CHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCCEECCCCCEEEEEECCCCEECC SGVTPPPYIMLLDSIIFLENPGRYEKEIHKALGETVEEIMTKNPLTTRSQERLSATAKLM CCCCCCCHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH NERSIHRLPVVDENGKVIGILTRGDIIRAMAAE HCCCCCCCCEECCCCCEEEEEECCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]