| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475868
Identifier: 113475868
GI number: 113475868
Start: 3472646
End: 3473185
Strand: Reverse
Name: 113475868
Synonym: Tery_2227
Alternate gene names: NA
Gene position: 3473185-3472646 (Counterclockwise)
Preceding gene: 113475869
Following gene: 113475867
Centisome position: 44.81
GC content: 30.93
Gene sequence:
>540_bases TTGGATAGCGCACCAGTTGCTAACTGCTTAGGTTTGTTAGCACTAATTTTCTATATTGCAACATTACTTCCCACAACTTT AAAAATTGTTTTTCCAGGAACAAAAAAAACAAGATTTCTTAAATTCTTATTCAAATATCGTCGTCAAATAGGCATAGTTA CTTTTTTCTTTACTGTTGCTCATGCACGGTTACTAATTATCAAGAGATACTTTGATTTTTTTAATCTTCAAACATACTTG ATATCATATACCGGAGTCGCCAGCTTCATTATTTTTGCACTACTAACAATAACCTCCAATAATTGGAGTATCAAAATAAT GAAAAAGAATTGGAAGAAACTACATCAAATGACTTATTTAGCAATGTTTCTTTTACTCTGGCACGTCATAGACAAAATGC AGGGTCATTGGAGCTATATTACCCCATTAGCAATGTTAGGAATTACAAGCATAACAATTTTATTTATTATTAGAAAAATT CTAGAGTGGAGAAAAAAATGGGCAAAAACTAAAAGCAAAAACGAAACCACTATTGCATAA
Upstream 100 bases:
>100_bases TTTAAACTCAATCTGAAAAATTAAAGAATAAATTTTGGAGCAGCTTTAGTTTTTATTTGCTTCCAATATAGTTTAATAAT TAAACACAGGAGAGTCTGTT
Downstream 100 bases:
>100_bases TATAGATATAAATTCTAAATATTTACTATCTACATTACTTCCCTTCTTGTTAACAAAAAGCTACTTGCTAAAAAAAAAAA TCATACAAATGCTGTAGCAA
Product: ferric reductase-like transmembrane protein
Products: NA
Alternate protein names: Ferric Reductase-Like Transmembrane Component-Like
Number of amino acids: Translated: 179; Mature: 179
Protein sequence:
>179_residues MDSAPVANCLGLLALIFYIATLLPTTLKIVFPGTKKTRFLKFLFKYRRQIGIVTFFFTVAHARLLIIKRYFDFFNLQTYL ISYTGVASFIIFALLTITSNNWSIKIMKKNWKKLHQMTYLAMFLLLWHVIDKMQGHWSYITPLAMLGITSITILFIIRKI LEWRKKWAKTKSKNETTIA
Sequences:
>Translated_179_residues MDSAPVANCLGLLALIFYIATLLPTTLKIVFPGTKKTRFLKFLFKYRRQIGIVTFFFTVAHARLLIIKRYFDFFNLQTYL ISYTGVASFIIFALLTITSNNWSIKIMKKNWKKLHQMTYLAMFLLLWHVIDKMQGHWSYITPLAMLGITSITILFIIRKI LEWRKKWAKTKSKNETTIA >Mature_179_residues MDSAPVANCLGLLALIFYIATLLPTTLKIVFPGTKKTRFLKFLFKYRRQIGIVTFFFTVAHARLLIIKRYFDFFNLQTYL ISYTGVASFIIFALLTITSNNWSIKIMKKNWKKLHQMTYLAMFLLLWHVIDKMQGHWSYITPLAMLGITSITILFIIRKI LEWRKKWAKTKSKNETTIA
Specific function: Unknown
COG id: COG2717
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21026; Mature: 21026
Theoretical pI: Translated: 11.05; Mature: 11.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDSAPVANCLGLLALIFYIATLLPTTLKIVFPGTKKTRFLKFLFKYRRQIGIVTFFFTVA CCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH HARLLIIKRYFDFFNLQTYLISYTGVASFIIFALLTITSNNWSIKIMKKNWKKLHQMTYL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHH AMFLLLWHVIDKMQGHWSYITPLAMLGITSITILFIIRKILEWRKKWAKTKSKNETTIA HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MDSAPVANCLGLLALIFYIATLLPTTLKIVFPGTKKTRFLKFLFKYRRQIGIVTFFFTVA CCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH HARLLIIKRYFDFFNLQTYLISYTGVASFIIFALLTITSNNWSIKIMKKNWKKLHQMTYL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHH AMFLLLWHVIDKMQGHWSYITPLAMLGITSITILFIIRKILEWRKKWAKTKSKNETTIA HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA