| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475752
Identifier: 113475752
GI number: 113475752
Start: 3278344
End: 3278970
Strand: Reverse
Name: 113475752
Synonym: Tery_2104
Alternate gene names: NA
Gene position: 3278970-3278344 (Counterclockwise)
Preceding gene: 113475754
Following gene: 113475751
Centisome position: 42.31
GC content: 34.45
Gene sequence:
>627_bases ATGTTTGGTGCTGGTTTGAGTAGTGCTTCTTGGGGATTTAAACTGGGCAGAGAGGCTTTAAAGGGAATTACTCAACCAGA TACTCGTCCCACTAATAATTTAGCAGGTACTCAAGGTAATTCAAATCGTCGAGAAGAGCTAGTTTTATTAAAGGAGGAAA AAATTGTTCTCAATGTCAAAAATACTATAATAAATGGTGGAGTAGTAGAGAAAAAGACAACTGTTGGAGAATCCCATCAA AAACAAGGTAAGGTAGAATCTGGTCAAATAAACCAGCCTCAGCAAACTTTTCCAATTATCAGTAGTGATGCCGGAGTAGT GCTGGAAATTAATGATATTCGTAGGTGGGGTAATTCTATAGTCTTGGATGTTAATTTAAAAAACAAAGGAGACCGAGCTG TAAGATTCTTATACAGTTTCTTGAATATTAAAGATGAACAAGGAAGAGTGATAAGTGCTAGTACAGAAGATTTACCAGGA GAACTTCCACCCAATGCTAGAAGATATTATGGTATTATCACAATTCCTGTTGCTTTATTAGATAACGCTAAAGAAATTTC CCTAGAACTTACAGATTATCCCGATCAAAAGTTAGATTTAAAAATATCTAAAATTAAAATAGATTAA
Upstream 100 bases:
>100_bases AGATAAATTATAGTATATCATAAAAAAAATCAAATCATACCTAAGACAGAAAAAAACTATGAATTCTAGTATTTTCCTAA CTCTAGGTTTACTGGCTCTA
Downstream 100 bases:
>100_bases TTAAATTTTTGATTTTTTCTTGCCCAAAATATTGCAATTTAAAGATACATATATTTGAGAATTGTGCCTGAGACTGTAAA AAAAATAGCGTTTTTTAGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 208; Mature: 208
Protein sequence:
>208_residues MFGAGLSSASWGFKLGREALKGITQPDTRPTNNLAGTQGNSNRREELVLLKEEKIVLNVKNTIINGGVVEKKTTVGESHQ KQGKVESGQINQPQQTFPIISSDAGVVLEINDIRRWGNSIVLDVNLKNKGDRAVRFLYSFLNIKDEQGRVISASTEDLPG ELPPNARRYYGIITIPVALLDNAKEISLELTDYPDQKLDLKISKIKID
Sequences:
>Translated_208_residues MFGAGLSSASWGFKLGREALKGITQPDTRPTNNLAGTQGNSNRREELVLLKEEKIVLNVKNTIINGGVVEKKTTVGESHQ KQGKVESGQINQPQQTFPIISSDAGVVLEINDIRRWGNSIVLDVNLKNKGDRAVRFLYSFLNIKDEQGRVISASTEDLPG ELPPNARRYYGIITIPVALLDNAKEISLELTDYPDQKLDLKISKIKID >Mature_208_residues MFGAGLSSASWGFKLGREALKGITQPDTRPTNNLAGTQGNSNRREELVLLKEEKIVLNVKNTIINGGVVEKKTTVGESHQ KQGKVESGQINQPQQTFPIISSDAGVVLEINDIRRWGNSIVLDVNLKNKGDRAVRFLYSFLNIKDEQGRVISASTEDLPG ELPPNARRYYGIITIPVALLDNAKEISLELTDYPDQKLDLKISKIKID
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22983; Mature: 22983
Theoretical pI: Translated: 9.34; Mature: 9.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 0.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFGAGLSSASWGFKLGREALKGITQPDTRPTNNLAGTQGNSNRREELVLLKEEKIVLNVK CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEE NTIINGGVVEKKTTVGESHQKQGKVESGQINQPQQTFPIISSDAGVVLEINDIRRWGNSI EEEECCCEEECCCCCCCCHHHCCCCCCCCCCCCHHHCCEEECCCCEEEEEHHHHHCCCEE VLDVNLKNKGDRAVRFLYSFLNIKDEQGRVISASTEDLPGELPPNARRYYGIITIPVALL EEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEEEEEHH DNAKEISLELTDYPDQKLDLKISKIKID CCCEEEEEEECCCCCCEEEEEEEEEEEC >Mature Secondary Structure MFGAGLSSASWGFKLGREALKGITQPDTRPTNNLAGTQGNSNRREELVLLKEEKIVLNVK CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEE NTIINGGVVEKKTTVGESHQKQGKVESGQINQPQQTFPIISSDAGVVLEINDIRRWGNSI EEEECCCEEECCCCCCCCHHHCCCCCCCCCCCCHHHCCEEECCCCEEEEEHHHHHCCCEE VLDVNLKNKGDRAVRFLYSFLNIKDEQGRVISASTEDLPGELPPNARRYYGIITIPVALL EEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEEEEEHH DNAKEISLELTDYPDQKLDLKISKIKID CCCEEEEEEECCCCCCEEEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA