| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475504
Identifier: 113475504
GI number: 113475504
Start: 2811499
End: 2812203
Strand: Reverse
Name: 113475504
Synonym: Tery_1836
Alternate gene names: NA
Gene position: 2812203-2811499 (Counterclockwise)
Preceding gene: 113475505
Following gene: 113475501
Centisome position: 36.29
GC content: 38.01
Gene sequence:
>705_bases ATGTTTACTAACAAGATAGCATCGGTTTATTTACGGTTCTTTTTTTTCGGTTTTGCTATTTGGATGGTAGCTTTCTATTT TTTGTTTTCAATTCCGACTACAGCAGTTACTCCTCAAAATTTACCTTCTCTGAAAGTTTATCCTCTACCAGAAACTTTGG CACAATGGCAAGACCCTAGTGGTAGTGGTGATTATTTTGATCAAATTGAAGTTCAGGATGTAGGTTATCTAATTTGGTCG CAATTTCCGATCAAGGTTTATGTCGAATCTTCTGATAATGATGAGTCTCGCTCTCGTCAATGGGTTAAGACTGTAGTAGA TGCTATTTGGGAATGGAATATTTATTTACCTTTGCAAGTGGTAGATAGCCCAGAAGTTGCTGATATTAAAATTTTTAACA AGCGACCTCCTCTGAGAGCAGGAAATTTAAGAGCGCGTTCGGCAGAAGCTCGCTATCAGTTATCTGAAGATGAGAATGGT ATTTTATCTCATAATTTTGTGATTTGGTTGAGTCCTATGCAAGTAGGTAAATATCTGCCTGCTGCTGCTCGTCATGAGTT TGGTCATGCTTTGGGTATTTGGGGTCATAGTCCTGAGAAAACTGATGTTATGTATTATTCTCAGGTGGCAGAACCTCCTC CTATTTCATCTAGGGATATTAATACTCTGAAGCGGATATATTTGCAAAGTACTAGACTAGGCTAA
Upstream 100 bases:
>100_bases AAACCCGGTACTGGCGTAGACGTATTTTGTTCAAAACAGTTGATGGCTAAGTGCTGACTTCTGAGTAGTTCTTTAACAAA CACTTCTCAAGCTTGGTATA
Downstream 100 bases:
>100_bases AAAAAATATAGTCATAACTTACACAGAAACCGAGTTGAGCAACTAAATTTCCTGGTTTTAAGAACAATAAATTATTCATA GTTTATAACAAAAATAAGCT
Product: peptidase M10A and M12B, matrixin and adamalysin
Products: NA
Alternate protein names: Zn-Dependent Protease; Peptidase
Number of amino acids: Translated: 234; Mature: 234
Protein sequence:
>234_residues MFTNKIASVYLRFFFFGFAIWMVAFYFLFSIPTTAVTPQNLPSLKVYPLPETLAQWQDPSGSGDYFDQIEVQDVGYLIWS QFPIKVYVESSDNDESRSRQWVKTVVDAIWEWNIYLPLQVVDSPEVADIKIFNKRPPLRAGNLRARSAEARYQLSEDENG ILSHNFVIWLSPMQVGKYLPAAARHEFGHALGIWGHSPEKTDVMYYSQVAEPPPISSRDINTLKRIYLQSTRLG
Sequences:
>Translated_234_residues MFTNKIASVYLRFFFFGFAIWMVAFYFLFSIPTTAVTPQNLPSLKVYPLPETLAQWQDPSGSGDYFDQIEVQDVGYLIWS QFPIKVYVESSDNDESRSRQWVKTVVDAIWEWNIYLPLQVVDSPEVADIKIFNKRPPLRAGNLRARSAEARYQLSEDENG ILSHNFVIWLSPMQVGKYLPAAARHEFGHALGIWGHSPEKTDVMYYSQVAEPPPISSRDINTLKRIYLQSTRLG >Mature_234_residues MFTNKIASVYLRFFFFGFAIWMVAFYFLFSIPTTAVTPQNLPSLKVYPLPETLAQWQDPSGSGDYFDQIEVQDVGYLIWS QFPIKVYVESSDNDESRSRQWVKTVVDAIWEWNIYLPLQVVDSPEVADIKIFNKRPPLRAGNLRARSAEARYQLSEDENG ILSHNFVIWLSPMQVGKYLPAAARHEFGHALGIWGHSPEKTDVMYYSQVAEPPPISSRDINTLKRIYLQSTRLG
Specific function: Unknown
COG id: COG5549
COG function: function code O; Predicted Zn-dependent protease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26935; Mature: 26935
Theoretical pI: Translated: 6.12; Mature: 6.12
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFTNKIASVYLRFFFFGFAIWMVAFYFLFSIPTTAVTPQNLPSLKVYPLPETLAQWQDPS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECHHHHHHCCCCC GSGDYFDQIEVQDVGYLIWSQFPIKVYVESSDNDESRSRQWVKTVVDAIWEWNIYLPLQV CCCCCCCEEEHHHHCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE VDSPEVADIKIFNKRPPLRAGNLRARSAEARYQLSEDENGILSHNFVIWLSPMQVGKYLP CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCEEECCEEEEECHHHHHHCCC AAARHEFGHALGIWGHSPEKTDVMYYSQVAEPPPISSRDINTLKRIYLQSTRLG HHHHHHCCCEEEECCCCCCCCCEEEEHHCCCCCCCCCCCHHHHHHHHHHHCCCC >Mature Secondary Structure MFTNKIASVYLRFFFFGFAIWMVAFYFLFSIPTTAVTPQNLPSLKVYPLPETLAQWQDPS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECHHHHHHCCCCC GSGDYFDQIEVQDVGYLIWSQFPIKVYVESSDNDESRSRQWVKTVVDAIWEWNIYLPLQV CCCCCCCEEEHHHHCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE VDSPEVADIKIFNKRPPLRAGNLRARSAEARYQLSEDENGILSHNFVIWLSPMQVGKYLP CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCEEECCEEEEECHHHHHHCCC AAARHEFGHALGIWGHSPEKTDVMYYSQVAEPPPISSRDINTLKRIYLQSTRLG HHHHHHCCCEEEECCCCCCCCCEEEEHHCCCCCCCCCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA