| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475478
Identifier: 113475478
GI number: 113475478
Start: 2759279
End: 2760169
Strand: Reverse
Name: 113475478
Synonym: Tery_1809
Alternate gene names: NA
Gene position: 2760169-2759279 (Counterclockwise)
Preceding gene: 113475479
Following gene: 113475477
Centisome position: 35.61
GC content: 40.18
Gene sequence:
>891_bases ATGAGTAAGCCCATCTTTGAATTAGTAGATGAACTGCCCAGTGACAATATTACAATTAAAGCTTTACGTGCTTTAGACTT CATTGTTCCAGGAGAGTGGGATAACTTGGTAGGATTTGAAAATACTATCCGCACTGTAACAGGAGAAGATGACGAAGACC TAATTCAGCAAATAGGCGATCGAGCTGTAATTCTCTTCAATGATAAAGCTCAAGGATATCAACGGGCCTTATGGCTTTAT CAAACTGTTAGTGGAGCAGGTCGTGCTTTAGGTACCGCTTCTTTAGCTAATATGGTTGGAGGTAAAATACCTCTGATCGG AGGTTTGTTAACTAGCCTTACTCCTAAACCAGGAAAAGCCCAAACTATTGATTTATCTCTCAAAATAGTTGCAGAACTAT TAGGTTTTTGTTCCATCAATGGCATTCCCGGAGATAGTATTGGTGATTTTGTCGGCGCTCTAGGAGATTATAGTGGAGAA TCTTTAATGCGTTTAGCAGCCTTAATTTGTTTTGATGGTTTAATTCCTTTAGGGCCAGATTTCCTACATTCCGCCGCTAA CTGGATAGAAGGACTTTCTACCTCGGACTTAGAAGAAAACGAAGGCTTCCGGGGAATTGAAGAAGCTATTCCAGGGGATG ATAAAGATAGTAAGTTAGGTTTTATTGGGGAAGCTTTTGGTTCTGTTTCTAGTTGGATGGGAGATTTTGTCAGTGATCGG GGTATTACACCAGGAAACGTGGCCAATAGCTTGCAAGGTTTCGTAGAATTTAGCGATGATAAATTGGACTATTTGGCTGC ATTCTTAGATATGAGTACCAATTATTATGAACATACAGGAGTTCAAACCCTGGCTCGTCGTCTAGTAGAACGAGCTTATG CAGAAATTTAA
Upstream 100 bases:
>100_bases TCCAAGAGGATAAAAAAAGGAAATTTCAGACTTAAAACCTCCGGTGTTAGCCAGAGTTACTGATAACTGATCAACGATAA CTGAAATTAAGGAGCCTTAA
Downstream 100 bases:
>100_bases GCAAGGAAGCATTTATGCCAGAAGAACAACAAAAAGCTAAAAAAACTGAAACTAAGCCTGCAGGAGGTAAGGTCAAACCA GAAAAGCCCCCTGCTGTCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 296; Mature: 295
Protein sequence:
>296_residues MSKPIFELVDELPSDNITIKALRALDFIVPGEWDNLVGFENTIRTVTGEDDEDLIQQIGDRAVILFNDKAQGYQRALWLY QTVSGAGRALGTASLANMVGGKIPLIGGLLTSLTPKPGKAQTIDLSLKIVAELLGFCSINGIPGDSIGDFVGALGDYSGE SLMRLAALICFDGLIPLGPDFLHSAANWIEGLSTSDLEENEGFRGIEEAIPGDDKDSKLGFIGEAFGSVSSWMGDFVSDR GITPGNVANSLQGFVEFSDDKLDYLAAFLDMSTNYYEHTGVQTLARRLVERAYAEI
Sequences:
>Translated_296_residues MSKPIFELVDELPSDNITIKALRALDFIVPGEWDNLVGFENTIRTVTGEDDEDLIQQIGDRAVILFNDKAQGYQRALWLY QTVSGAGRALGTASLANMVGGKIPLIGGLLTSLTPKPGKAQTIDLSLKIVAELLGFCSINGIPGDSIGDFVGALGDYSGE SLMRLAALICFDGLIPLGPDFLHSAANWIEGLSTSDLEENEGFRGIEEAIPGDDKDSKLGFIGEAFGSVSSWMGDFVSDR GITPGNVANSLQGFVEFSDDKLDYLAAFLDMSTNYYEHTGVQTLARRLVERAYAEI >Mature_295_residues SKPIFELVDELPSDNITIKALRALDFIVPGEWDNLVGFENTIRTVTGEDDEDLIQQIGDRAVILFNDKAQGYQRALWLYQ TVSGAGRALGTASLANMVGGKIPLIGGLLTSLTPKPGKAQTIDLSLKIVAELLGFCSINGIPGDSIGDFVGALGDYSGES LMRLAALICFDGLIPLGPDFLHSAANWIEGLSTSDLEENEGFRGIEEAIPGDDKDSKLGFIGEAFGSVSSWMGDFVSDRG ITPGNVANSLQGFVEFSDDKLDYLAAFLDMSTNYYEHTGVQTLARRLVERAYAEI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31868; Mature: 31737
Theoretical pI: Translated: 4.04; Mature: 4.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKPIFELVDELPSDNITIKALRALDFIVPGEWDNLVGFENTIRTVTGEDDEDLIQQIGD CCCHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHCCC RAVILFNDKAQGYQRALWLYQTVSGAGRALGTASLANMVGGKIPLIGGLLTSLTPKPGKA CEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCC QTIDLSLKIVAELLGFCSINGIPGDSIGDFVGALGDYSGESLMRLAALICFDGLIPLGPD EEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHH FLHSAANWIEGLSTSDLEENEGFRGIEEAIPGDDKDSKLGFIGEAFGSVSSWMGDFVSDR HHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC GITPGNVANSLQGFVEFSDDKLDYLAAFLDMSTNYYEHTGVQTLARRLVERAYAEI CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHHCC >Mature Secondary Structure SKPIFELVDELPSDNITIKALRALDFIVPGEWDNLVGFENTIRTVTGEDDEDLIQQIGD CCHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHCCC RAVILFNDKAQGYQRALWLYQTVSGAGRALGTASLANMVGGKIPLIGGLLTSLTPKPGKA CEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCC QTIDLSLKIVAELLGFCSINGIPGDSIGDFVGALGDYSGESLMRLAALICFDGLIPLGPD EEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHH FLHSAANWIEGLSTSDLEENEGFRGIEEAIPGDDKDSKLGFIGEAFGSVSSWMGDFVSDR HHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC GITPGNVANSLQGFVEFSDDKLDYLAAFLDMSTNYYEHTGVQTLARRLVERAYAEI CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA