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The map label for this gene is petC

Identifier: 113475470

GI number: 113475470

Start: 2747218

End: 2747757

Strand: Reverse

Name: petC

Synonym: Tery_1799

Alternate gene names: 113475470

Gene position: 2747757-2747218 (Counterclockwise)

Preceding gene: 113475472

Following gene: 113475469

Centisome position: 35.45

GC content: 42.59

Gene sequence:

>540_bases
ATGGCTCAAGCAGAAGGAACACCAGATGTACCCAGTATGGGTCGTCGTCAATTTATGAATCTTCTCACTTTTGGAACTGT
AACAGGAGTAGCTCTTGGAGCACTTTACCCAGTCGTTAACTATTTTATCCCTCCATCTAGTGGTGGATCTGGTGGTGGAG
TAACAGCTAAAGATGCTCTTGGTAACGATATTATAGTCAGTGAATTTTTGGCCAATCACAACTCCGGAGAACGAACTTTA
GCCCAAGGACTTAAAGGAGACCCTACTTATGTAGTGATCGAAGGAGAGCAAACCTTGGCTGAATATGGGTTAAATGCAGT
ATGTACTCATCTAGGGTGTGTTGTACCTTGGAATGGTAGTGAGAATAAATTTATTTGTCCCTGTCATGGTTCTCAGTATG
ACAATACAGGAAAAGTAGTGAGGGGGCCAGCACCTTTATCTCTAGCATTAGTTCATGCGAATGTTAGTGATGATAAACTG
GTCTTTACTCAATGGGAAGAGACAGATTTCCGTACCGGAGAAAAGCCTTGGTGGGTTTAA

Upstream 100 bases:

>100_bases
GTCAACTTGTCCGTAGTTGCAGGCTAACAGCAATTATATTTTTGTCTGCATATAATTCATTCAATAGAAATGTAAATTAA
CAAAAACACCTAACATATTC

Downstream 100 bases:

>100_bases
GTTTTGTCTATTTTTTAAGACAAGTTTAAGCTGCACCTATGTAATGAATATGCCATTAATTCTGTTAACTTTATAGTTGC
CCAGAATATGGACTATCTAA

Product: cytochrome b6-f complex iron-sulfur subunit

Products: NA

Alternate protein names: Plastohydroquinone:plastocyanin oxidoreductase iron-sulfur protein; ISP; RISP; Rieske iron-sulfur protein

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MAQAEGTPDVPSMGRRQFMNLLTFGTVTGVALGALYPVVNYFIPPSSGGSGGGVTAKDALGNDIIVSEFLANHNSGERTL
AQGLKGDPTYVVIEGEQTLAEYGLNAVCTHLGCVVPWNGSENKFICPCHGSQYDNTGKVVRGPAPLSLALVHANVSDDKL
VFTQWEETDFRTGEKPWWV

Sequences:

>Translated_179_residues
MAQAEGTPDVPSMGRRQFMNLLTFGTVTGVALGALYPVVNYFIPPSSGGSGGGVTAKDALGNDIIVSEFLANHNSGERTL
AQGLKGDPTYVVIEGEQTLAEYGLNAVCTHLGCVVPWNGSENKFICPCHGSQYDNTGKVVRGPAPLSLALVHANVSDDKL
VFTQWEETDFRTGEKPWWV
>Mature_178_residues
AQAEGTPDVPSMGRRQFMNLLTFGTVTGVALGALYPVVNYFIPPSSGGSGGGVTAKDALGNDIIVSEFLANHNSGERTLA
QGLKGDPTYVVIEGEQTLAEYGLNAVCTHLGCVVPWNGSENKFICPCHGSQYDNTGKVVRGPAPLSLALVHANVSDDKLV
FTQWEETDFRTGEKPWWV

Specific function: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions

COG id: COG0723

COG function: function code C; Rieske Fe-S protein

Gene ontology:

Cell location: Cellular thylakoid membrane; Single-pass membrane protein. Note=The transmembrane helix obliquely spans the membrane in one monomer, and its extrinsic C- terminal domain is part of the other monomer (By similarity)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): UCRI_TRIEI (Q114L6)

Other databases:

- EMBL:   CP000393
- RefSeq:   YP_721531.1
- ProteinModelPortal:   Q114L6
- SMR:   Q114L6
- STRING:   Q114L6
- GeneID:   4243781
- GenomeReviews:   CP000393_GR
- KEGG:   ter:Tery_1799
- NMPDR:   fig|203124.1.peg.418
- eggNOG:   COG0723
- HOGENOM:   HBG668715
- OMA:   YPVANYF
- ProtClustDB:   PRK13474
- BioCyc:   TERY203124:TERY_1799-MONOMER
- HAMAP:   MF_01335
- InterPro:   IPR014909
- InterPro:   IPR017941
- InterPro:   IPR014349
- InterPro:   IPR005805
- Gene3D:   G3DSA:2.102.10.10
- PANTHER:   PTHR10134
- PRINTS:   PR00162

Pfam domain/function: PF08802 CytB6-F_Fe-S; PF00355 Rieske; SSF50022 Rieske_dom

EC number: =1.10.99.1

Molecular weight: Translated: 19116; Mature: 18984

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS51296 RIESKE; PS00199 RIESKE_1 ; PS00200 RIESKE_2

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x155673fc)-;

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQAEGTPDVPSMGRRQFMNLLTFGTVTGVALGALYPVVNYFIPPSSGGSGGGVTAKDAL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEHHHC
GNDIIVSEFLANHNSGERTLAQGLKGDPTYVVIEGEQTLAEYGLNAVCTHLGCVVPWNGS
CCCHHHHHHHHCCCCCHHHHHHCCCCCCCEEEEECCHHHHHHCHHHHHHHCCEEEECCCC
ENKFICPCHGSQYDNTGKVVRGPAPLSLALVHANVSDDKLVFTQWEETDFRTGEKPWWV
CCCEEECCCCCCCCCCCCEEECCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCH
>Mature Secondary Structure 
AQAEGTPDVPSMGRRQFMNLLTFGTVTGVALGALYPVVNYFIPPSSGGSGGGVTAKDAL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEHHHC
GNDIIVSEFLANHNSGERTLAQGLKGDPTYVVIEGEQTLAEYGLNAVCTHLGCVVPWNGS
CCCHHHHHHHHCCCCCHHHHHHCCCCCCCEEEEECCHHHHHHCHHHHHHHCCEEEECCCC
ENKFICPCHGSQYDNTGKVVRGPAPLSLALVHANVSDDKLVFTQWEETDFRTGEKPWWV
CCCEEECCCCCCCCCCCCEEECCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA