| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113474570
Identifier: 113474570
GI number: 113474570
Start: 1175074
End: 1175319
Strand: Reverse
Name: 113474570
Synonym: Tery_0726
Alternate gene names: NA
Gene position: 1175319-1175074 (Counterclockwise)
Preceding gene: 113474571
Following gene: 113474568
Centisome position: 15.17
GC content: 32.11
Gene sequence:
>246_bases ATGGGTCTGTTAAGGGTTTGTTATGTACTTGTAACTAAGTTGATGTCTCTAGACTCATACTTTTCTTTTTTGCTACTAAG CGATCGCTCTCGACTATCAAATATTAACTTACGTTTAGTGGTAAGGTTGAAGTATAACTTAAATTCTCAATGCTTGCATC ACTATTTTTATCTCAAAAGAACAATGATCAATATTTTATTGAAAAAATATCAAAGTACTACTACAGGAGTTGCGATCGCT TTCTGA
Upstream 100 bases:
>100_bases TGTTTTACGGAAGTTAAAGTTCATCCATTCAAAGGCTAAAAGTAAGATTTTTAAGACTCAAAATTTTTGGGTGCTCTTAA AGCTGTAAAGATATTGGTTT
Downstream 100 bases:
>100_bases CTTTACGAAAATCAAAAAATGGTTTCTTGTCCCAGAGCAAAAGTATTAAGTTTAAGTAATAAAATCTATATAATAAATAA TTTAGTAGTCTGAATTTTCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 81; Mature: 80
Protein sequence:
>81_residues MGLLRVCYVLVTKLMSLDSYFSFLLLSDRSRLSNINLRLVVRLKYNLNSQCLHHYFYLKRTMINILLKKYQSTTTGVAIA F
Sequences:
>Translated_81_residues MGLLRVCYVLVTKLMSLDSYFSFLLLSDRSRLSNINLRLVVRLKYNLNSQCLHHYFYLKRTMINILLKKYQSTTTGVAIA F >Mature_80_residues GLLRVCYVLVTKLMSLDSYFSFLLLSDRSRLSNINLRLVVRLKYNLNSQCLHHYFYLKRTMINILLKKYQSTTTGVAIAF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 9525; Mature: 9393
Theoretical pI: Translated: 10.50; Mature: 10.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLLRVCYVLVTKLMSLDSYFSFLLLSDRSRLSNINLRLVVRLKYNLNSQCLHHYFYLKR CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCEEEEEEEECCCCHHHHHHHHHHHH TMINILLKKYQSTTTGVAIAF HHHHHHHHHHCCCCCCEEEEC >Mature Secondary Structure GLLRVCYVLVTKLMSLDSYFSFLLLSDRSRLSNINLRLVVRLKYNLNSQCLHHYFYLKR CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCEEEEEEEECCCCHHHHHHHHHHHH TMINILLKKYQSTTTGVAIAF HHHHHHHHHHCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA