| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474568
Identifier: 113474568
GI number: 113474568
Start: 1172915
End: 1173760
Strand: Reverse
Name: 113474568
Synonym: Tery_0724
Alternate gene names: NA
Gene position: 1173760-1172915 (Counterclockwise)
Preceding gene: 113474570
Following gene: 113474567
Centisome position: 15.15
GC content: 30.02
Gene sequence:
>846_bases ATGCCAAATATTTTTTTTACAACATCATGCTACAAAACATCAAAAATGTCGTTATTATCAATTATATTAGGATGGTTTTT AGCCCTAAGCTATCAGACTTTATCTCTAGGAAAATCAATCAAAAATCAAACCTTAAATACCAATCAAAATCATAGCCAAA ATACAATTTTTACCTCCCAAAATAACACATCAAATAATGAACCACTAATAACAGATTTTTTTAGAGATAAAAGACCTGTT GAAAATTTACCACCATTAATTATAACACCCTCAGCCCAACAACAAGAACCAATATTTAACCCCATTGAACCTAATCCATT TCCAAGTTTACAATATATTGTTTATATTGATTCAAAAAGTCAAATTTTGTTAAGAATTATTCGGCAAATAATTGAACCAA GAGCAGTATTTCGCTTTTTTAATAACCGAAAAGTTATTCAAGTCGGAAGCTTTTCTGAGTTGTTTTTTACCTTAGATTTG TTAGATTTTTTAAAGGAAAAAGGAATTCATGGTAAACGATTGAAGTTGAATCCTGGTGAAGCATTTGGAAAACCTGTAAG TTCTACAACTTTAGCAGCTACTATATATCCTCCAGTGACTAATTCAATAGCTTATGGACTAAATAGTAAGTCCTATTATT TACTAATTCCTAGCCAGTCAAAAGATTTAGCTATAACGACATATAAATTGGGATTATTAGGAGTTCCTGATAGAGGTATT CAGGTGACAGAAATACCAGAAAATGTAGCTATAGGACCTTTTGAAAATGAAAAAACTGCAGAAAAATGGCAACGCTATTT ATTAGATTCAGGGTTTATTAATGTAGTTATTTATTATGGTCGTTAG
Upstream 100 bases:
>100_bases TTTATTCATTGGATTTGAGTTTATACAATTAAAAAAAATATATATCTATCTAAGCATTCAGCTATCAGCTAAAATTCATC ATTTATTGAAGTAAGTAACC
Downstream 100 bases:
>100_bases AATAACAAAGAAGTTAACAAAGTTAAAGTTTTAAAAGGTATGAAATCCAAAGTTGTTTTGGTAAAAGAGATTCAAATAAC CTTTAAAAAACACTTCTCAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 281; Mature: 280
Protein sequence:
>281_residues MPNIFFTTSCYKTSKMSLLSIILGWFLALSYQTLSLGKSIKNQTLNTNQNHSQNTIFTSQNNTSNNEPLITDFFRDKRPV ENLPPLIITPSAQQQEPIFNPIEPNPFPSLQYIVYIDSKSQILLRIIRQIIEPRAVFRFFNNRKVIQVGSFSELFFTLDL LDFLKEKGIHGKRLKLNPGEAFGKPVSSTTLAATIYPPVTNSIAYGLNSKSYYLLIPSQSKDLAITTYKLGLLGVPDRGI QVTEIPENVAIGPFENEKTAEKWQRYLLDSGFINVVIYYGR
Sequences:
>Translated_281_residues MPNIFFTTSCYKTSKMSLLSIILGWFLALSYQTLSLGKSIKNQTLNTNQNHSQNTIFTSQNNTSNNEPLITDFFRDKRPV ENLPPLIITPSAQQQEPIFNPIEPNPFPSLQYIVYIDSKSQILLRIIRQIIEPRAVFRFFNNRKVIQVGSFSELFFTLDL LDFLKEKGIHGKRLKLNPGEAFGKPVSSTTLAATIYPPVTNSIAYGLNSKSYYLLIPSQSKDLAITTYKLGLLGVPDRGI QVTEIPENVAIGPFENEKTAEKWQRYLLDSGFINVVIYYGR >Mature_280_residues PNIFFTTSCYKTSKMSLLSIILGWFLALSYQTLSLGKSIKNQTLNTNQNHSQNTIFTSQNNTSNNEPLITDFFRDKRPVE NLPPLIITPSAQQQEPIFNPIEPNPFPSLQYIVYIDSKSQILLRIIRQIIEPRAVFRFFNNRKVIQVGSFSELFFTLDLL DFLKEKGIHGKRLKLNPGEAFGKPVSSTTLAATIYPPVTNSIAYGLNSKSYYLLIPSQSKDLAITTYKLGLLGVPDRGIQ VTEIPENVAIGPFENEKTAEKWQRYLLDSGFINVVIYYGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31882; Mature: 31751
Theoretical pI: Translated: 9.75; Mature: 9.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNIFFTTSCYKTSKMSLLSIILGWFLALSYQTLSLGKSIKNQTLNTNQNHSQNTIFTSQ CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEC NNTSNNEPLITDFFRDKRPVENLPPLIITPSAQQQEPIFNPIEPNPFPSLQYIVYIDSKS CCCCCCCCEEHHHHHCCCCHHHCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCH QILLRIIRQIIEPRAVFRFFNNRKVIQVGSFSELFFTLDLLDFLKEKGIHGKRLKLNPGE HHHHHHHHHHHCHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEECCCH AFGKPVSSTTLAATIYPPVTNSIAYGLNSKSYYLLIPSQSKDLAITTYKLGLLGVPDRGI HHCCCCCCCEEEEEECCCCCCCEEECCCCCEEEEEEECCCCCEEEEEEEEEEEECCCCCE QVTEIPENVAIGPFENEKTAEKWQRYLLDSGFINVVIYYGR EEEECCCCCEECCCCCCHHHHHHHHHHHCCCCEEEEEEECC >Mature Secondary Structure PNIFFTTSCYKTSKMSLLSIILGWFLALSYQTLSLGKSIKNQTLNTNQNHSQNTIFTSQ CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEC NNTSNNEPLITDFFRDKRPVENLPPLIITPSAQQQEPIFNPIEPNPFPSLQYIVYIDSKS CCCCCCCCEEHHHHHCCCCHHHCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCH QILLRIIRQIIEPRAVFRFFNNRKVIQVGSFSELFFTLDLLDFLKEKGIHGKRLKLNPGE HHHHHHHHHHHCHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEECCCH AFGKPVSSTTLAATIYPPVTNSIAYGLNSKSYYLLIPSQSKDLAITTYKLGLLGVPDRGI HHCCCCCCCEEEEEECCCCCCCEEECCCCCEEEEEEECCCCCEEEEEEEEEEEECCCCCE QVTEIPENVAIGPFENEKTAEKWQRYLLDSGFINVVIYYGR EEEECCCCCEECCCCCCHHHHHHHHHHHCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA