Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113474528
Identifier: 113474528
GI number: 113474528
Start: 1109684
End: 1110385
Strand: Reverse
Name: 113474528
Synonym: Tery_0679
Alternate gene names: NA
Gene position: 1110385-1109684 (Counterclockwise)
Preceding gene: 113474529
Following gene: 113474527
Centisome position: 14.33
GC content: 38.6
Gene sequence:
>702_bases ATGCTATTTAATAAGTATATTCGTTTTATTTACTTCACCTTGGGTTTTACTCTTCCAATTGTGGCAGCTTTCACACTTTT ACAAAAACCACTTAATGCTCAATCATCAGAAAGTGTAAACTCAGAAAAATTTTCTCCTGTTCCAGTTCAACCAATACAAC TTACCCAACTTGAACTAAACCCAGAAAAATCATCTCCTATTCCAGTTCAACCAATACAACCTACCCAACCCGAAAATGCT CGTCCTTTAGATCCACAGAATAGTCTTCTCAGTCTCCAGGGAGGCCAAAGTTTAATGAAGGAAGCTGACAATGCTATTAC TTCCGAGAATTATGATTTAGCTAACCAAAAACTACAAGAAGCTCGTCAAATATTTAATCAACTTTCTAATTTCCATAGTC AATTAGCTGCTAGTTTTTCTGGTATTGACAATCGTTTAGCAGATGGCCAACGTACTAAAGCTCTGGAAACTGCCCAAATG AGAGACCAAGCTACTTATCAGTTGGCCCTTGTCCACAGGGCCCAAAATCAACCTGAACTAGCAGTACCATTACTGGTTCA AATTATTAGCTCTCAGCAACCGACTCGTGATTTGGGAAAAAAAGCTTACCAGCAGTTACTAGAGCTAGGGTTTGTGGATA TTCCTTATCCTAGAACTTCTGGAGATGGTCAACCTCCAACATCATCTCAGTCTCTTAATTAA
Upstream 100 bases:
>100_bases CTAAGCACGAAAATTATACCCGCGCTTCAGTAACCGTTAAAAATAGTGATAATATATGTGAAAAATAGTTTTTTATTTAT ATAAATCAACTAACATAATC
Downstream 100 bases:
>100_bases AATGTAGAATAGCAGTACTTTCTTAGGGGAAAAATTATGAATTTAGAGCAAGTTGAGTCAATGATTAAAGCTAAGTTGCC AGATGCTCAGGTAGAAGTCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 233; Mature: 233
Protein sequence:
>233_residues MLFNKYIRFIYFTLGFTLPIVAAFTLLQKPLNAQSSESVNSEKFSPVPVQPIQLTQLELNPEKSSPIPVQPIQPTQPENA RPLDPQNSLLSLQGGQSLMKEADNAITSENYDLANQKLQEARQIFNQLSNFHSQLAASFSGIDNRLADGQRTKALETAQM RDQATYQLALVHRAQNQPELAVPLLVQIISSQQPTRDLGKKAYQQLLELGFVDIPYPRTSGDGQPPTSSQSLN
Sequences:
>Translated_233_residues MLFNKYIRFIYFTLGFTLPIVAAFTLLQKPLNAQSSESVNSEKFSPVPVQPIQLTQLELNPEKSSPIPVQPIQPTQPENA RPLDPQNSLLSLQGGQSLMKEADNAITSENYDLANQKLQEARQIFNQLSNFHSQLAASFSGIDNRLADGQRTKALETAQM RDQATYQLALVHRAQNQPELAVPLLVQIISSQQPTRDLGKKAYQQLLELGFVDIPYPRTSGDGQPPTSSQSLN >Mature_233_residues MLFNKYIRFIYFTLGFTLPIVAAFTLLQKPLNAQSSESVNSEKFSPVPVQPIQLTQLELNPEKSSPIPVQPIQPTQPENA RPLDPQNSLLSLQGGQSLMKEADNAITSENYDLANQKLQEARQIFNQLSNFHSQLAASFSGIDNRLADGQRTKALETAQM RDQATYQLALVHRAQNQPELAVPLLVQIISSQQPTRDLGKKAYQQLLELGFVDIPYPRTSGDGQPPTSSQSLN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25888; Mature: 25888
Theoretical pI: Translated: 5.80; Mature: 5.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLFNKYIRFIYFTLGFTLPIVAAFTLLQKPLNAQSSESVNSEKFSPVPVQPIQLTQLELN CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEC PEKSSPIPVQPIQPTQPENARPLDPQNSLLSLQGGQSLMKEADNAITSENYDLANQKLQE CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHH ARQIFNQLSNFHSQLAASFSGIDNRLADGQRTKALETAQMRDQATYQLALVHRAQNQPEL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH AVPLLVQIISSQQPTRDLGKKAYQQLLELGFVDIPYPRTSGDGQPPTSSQSLN HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MLFNKYIRFIYFTLGFTLPIVAAFTLLQKPLNAQSSESVNSEKFSPVPVQPIQLTQLELN CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEC PEKSSPIPVQPIQPTQPENARPLDPQNSLLSLQGGQSLMKEADNAITSENYDLANQKLQE CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHH ARQIFNQLSNFHSQLAASFSGIDNRLADGQRTKALETAQMRDQATYQLALVHRAQNQPEL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH AVPLLVQIISSQQPTRDLGKKAYQQLLELGFVDIPYPRTSGDGQPPTSSQSLN HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA