| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is acnB [H]
Identifier: 113474515
GI number: 113474515
Start: 1086982
End: 1089591
Strand: Reverse
Name: acnB [H]
Synonym: Tery_0664
Alternate gene names: 113474515
Gene position: 1089591-1086982 (Counterclockwise)
Preceding gene: 113474517
Following gene: 113474511
Centisome position: 14.06
GC content: 43.95
Gene sequence:
>2610_bases ATGTTAGAAAATTATAACAATCAGATCCAACAACGAGCAACCCTAGGTATCCCACCTTTACCACTAGATGCTGAACAAAC ATCAGACCTATGTGAACTACTGAAAAGTCCACCGATAGGAACAGAAGAGAAGTTAATGACATTACTACGCTTGCGTGTAC CACCAGGAGTAGATGAAGCAGCCTATGTCAAAGCAGGATTTCTCACAGGTATTGCTAAAGGAGAAATAACCACCCCTCTT ATCACCCCCACCTATGCAGTGGAACTATTAGGAACAATGGTTGGTGGTTATAATGTCCAATCTCTAATTGACATACTCAA ATCGGAAAATTCTGAATTGGCCAGCACAGCAGCTACTGCCCTAAGTAAAATTCTGCTAGTATATGACGCTTTCAATGACG TGATCAAATTAGGAGAAACCAACCCCTATGCCAAAAAAGTAGTAGACTCTTGGGCAGCAGCAGAATGGTTTACGACTCGG CCCCAACTTCCAGAAGCGATAACAGTTACCGTCTTCAAAGTCCCAGGTGAAACTAACACCGACGATCTCTCACCAGCTCC CCACGCCACGACTCGTCCCGACATTCCTCTTCACGCATTAGCAATGCTAGAGTCAAAAATGCCAGAAGGGTTAAAGACAA TTGCGCAATTAAAGCAAAAAGGTCATCCAGTAGCTTATGTTGGAGATATTGTGGGTACAGGTTCATCCCGTAAATCTGCC TGTAACTCCATGCTGTGGCATATTGGGGAAGATATTCCTTTCATTCCCAATAAACGTTCTGGTGGTTATATTCTGGGAGG TAAAATTGCTCCTATTTTCTTCAACACTGCAGAAGACTCCGGCGCACTACCGATCGAATGCGATGTCACAAAAATGGAGA CAGGCATGGTCATAACTATCTATCCCTACAAAGGAGAAATTATCAACGAAGCAGGAGAAATAATTTCCACCTTTACCCTA AAACCAGAAACTATGTTAGACGAAGTTAGAGCCGGAGGGCGGATACCTCTATTAATTGGGCGTACTCTGACTGACAAAAC TCGTAATATTCTAGGGTTAGAAACCAGTTCTGTATTTACTCGTCCCCAACTACCAACAGACACAGGTAAAGGTTTCACCT TGGCACAGAAAATGGTAGGTAAAGCTTGTGGTTTAGCAGGCATTCGACCCGGTACTGCTTGCGAGCCATTGATGACAACA GTGGGTTCTCAGGATACTACAGGACCAATGACCAGGGACGAAATGAAAGAACTTGCTTGCCTTGGTTTCAGCGCTGATTT AGTTATGCAGAGTTTTTGTCATACTGCTGCCTATCCCAAACCAGTTGATATTAACACTCATAAAGAATTACCAGATTTCT TTTCTGCTCGGGGTGGGGTAGCGTTGCGTCCTGGAGATGGAATTATTCATTCTTGGTTAAACCGAATGTTGTTACCGGAT ACAGTGGGAACAGGAGGTGATTCTCATACCCGTTTTCCTCTGGGAATTTCTTTCCCTGCGGGTTCTGGTTTGGTAGCATT TGCAGCCGCTCTAGGTTTGATGCCATTGGATATGCCAGAATCTGTTTTGGTGAGATTTAAGGGTGAGTTACAACCAGGGG TAACACTACGAGATATTGTGAATGCTATTCCCTATGTAGCGATTCAAAAAGGGTTGTTGACTGTAGCTCTGGAGAACAAG AAAAATGTCTTTTCCGGACGAATTATGGAAATGGAAGGTTTGCCATATTTGAAGGTTGAGCAGGCATTTGAATTAACGGA TGCGACGGCGGAACGTTCCTGTGCTGGTTCCACAATTAAGTTGGGTGCGGAGACAATTTCTGAGTATTTGCGTTCTAATG TTACTTTGTTAAAGAATATGGTAGCACGGGGTTATCAGGATACACGAACAATTATGCGTCGGGTTTCTAAGATGGAGCAA TGGTTGGCAAATCCAAAGTTGATGTCAGCAGATGCGAATGCGGAGTATGCAGAAATTATTGAAGTAGATTTGAATGAGAT CAAGGAACCTATTGTGGCGGCACCCAATGACCCCGATAATATTAAATTGATGTCCGAATGTGCGGGGGATAAAATTGATG AAGTATTTATCGGTTCTTGCATGACAAATATTGGTCACTATCGCGCTGCTGCGAAAGTATTGGAAGGTGCAGGACGAGTT AAGGGTGTATTGTGGATATGTCCACCTACTCGCATGGATGAGAAACAGTTACGGGAGGAAGGAATATACGGTGTCTTTGC TGCTGCTGGTGCGCGGATGGAAATGCCAGGATGTTCTTTGTGTATGGGAAATCAGGCACGGGTTAAAAACGGGGTGACAG TGTTTTCGACTTCGACCAGGAATTTTAATAACCGTATGGGTAAAGGTGCTCGTGTGTATTTGGGTTCTGCAGAATTAGCG GCGGTGTGTGCGCTGTTAGGGCGAATACCTAGTGTGGATGAGTATTTGGATATTATGAAGGAGAAAGTAGATCCCTTTGC GGGTGATTTGTATCGGTATTTGAATTTCGATCAAATTGCTGGTTTTGAGGACGAAGGTCGAGTGGTCAGTTTGGACGAGA TGCCTAACACTGAGGATATTTTGGAAACGCCAGTTGTTGTGGCTAAGTAG
Upstream 100 bases:
>100_bases ATTTAGAAACTCCATACTTTTATATTATATCAAAATCTAGTTCAAATTAATATCAAAACTGTAAAATTAATGTTGAGTTA AGTAGAAGGACACTATAACA
Downstream 100 bases:
>100_bases GTAAGTTGCTAGATCAGGGTGGGCGATCGCTCACCCTACTCTTTTACAAAGCATCTATACTTTAAGAGTTAATTTGGGAA AGTATTTACCAACAGTAAGT
Product: bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Products: NA
Alternate protein names: Aconitase 2; 2-methylisocitrate dehydratase; Citrate hydro-lyase 2 [H]
Number of amino acids: Translated: 869; Mature: 869
Protein sequence:
>869_residues MLENYNNQIQQRATLGIPPLPLDAEQTSDLCELLKSPPIGTEEKLMTLLRLRVPPGVDEAAYVKAGFLTGIAKGEITTPL ITPTYAVELLGTMVGGYNVQSLIDILKSENSELASTAATALSKILLVYDAFNDVIKLGETNPYAKKVVDSWAAAEWFTTR PQLPEAITVTVFKVPGETNTDDLSPAPHATTRPDIPLHALAMLESKMPEGLKTIAQLKQKGHPVAYVGDIVGTGSSRKSA CNSMLWHIGEDIPFIPNKRSGGYILGGKIAPIFFNTAEDSGALPIECDVTKMETGMVITIYPYKGEIINEAGEIISTFTL KPETMLDEVRAGGRIPLLIGRTLTDKTRNILGLETSSVFTRPQLPTDTGKGFTLAQKMVGKACGLAGIRPGTACEPLMTT VGSQDTTGPMTRDEMKELACLGFSADLVMQSFCHTAAYPKPVDINTHKELPDFFSARGGVALRPGDGIIHSWLNRMLLPD TVGTGGDSHTRFPLGISFPAGSGLVAFAAALGLMPLDMPESVLVRFKGELQPGVTLRDIVNAIPYVAIQKGLLTVALENK KNVFSGRIMEMEGLPYLKVEQAFELTDATAERSCAGSTIKLGAETISEYLRSNVTLLKNMVARGYQDTRTIMRRVSKMEQ WLANPKLMSADANAEYAEIIEVDLNEIKEPIVAAPNDPDNIKLMSECAGDKIDEVFIGSCMTNIGHYRAAAKVLEGAGRV KGVLWICPPTRMDEKQLREEGIYGVFAAAGARMEMPGCSLCMGNQARVKNGVTVFSTSTRNFNNRMGKGARVYLGSAELA AVCALLGRIPSVDEYLDIMKEKVDPFAGDLYRYLNFDQIAGFEDEGRVVSLDEMPNTEDILETPVVVAK
Sequences:
>Translated_869_residues MLENYNNQIQQRATLGIPPLPLDAEQTSDLCELLKSPPIGTEEKLMTLLRLRVPPGVDEAAYVKAGFLTGIAKGEITTPL ITPTYAVELLGTMVGGYNVQSLIDILKSENSELASTAATALSKILLVYDAFNDVIKLGETNPYAKKVVDSWAAAEWFTTR PQLPEAITVTVFKVPGETNTDDLSPAPHATTRPDIPLHALAMLESKMPEGLKTIAQLKQKGHPVAYVGDIVGTGSSRKSA CNSMLWHIGEDIPFIPNKRSGGYILGGKIAPIFFNTAEDSGALPIECDVTKMETGMVITIYPYKGEIINEAGEIISTFTL KPETMLDEVRAGGRIPLLIGRTLTDKTRNILGLETSSVFTRPQLPTDTGKGFTLAQKMVGKACGLAGIRPGTACEPLMTT VGSQDTTGPMTRDEMKELACLGFSADLVMQSFCHTAAYPKPVDINTHKELPDFFSARGGVALRPGDGIIHSWLNRMLLPD TVGTGGDSHTRFPLGISFPAGSGLVAFAAALGLMPLDMPESVLVRFKGELQPGVTLRDIVNAIPYVAIQKGLLTVALENK KNVFSGRIMEMEGLPYLKVEQAFELTDATAERSCAGSTIKLGAETISEYLRSNVTLLKNMVARGYQDTRTIMRRVSKMEQ WLANPKLMSADANAEYAEIIEVDLNEIKEPIVAAPNDPDNIKLMSECAGDKIDEVFIGSCMTNIGHYRAAAKVLEGAGRV KGVLWICPPTRMDEKQLREEGIYGVFAAAGARMEMPGCSLCMGNQARVKNGVTVFSTSTRNFNNRMGKGARVYLGSAELA AVCALLGRIPSVDEYLDIMKEKVDPFAGDLYRYLNFDQIAGFEDEGRVVSLDEMPNTEDILETPVVVAK >Mature_869_residues MLENYNNQIQQRATLGIPPLPLDAEQTSDLCELLKSPPIGTEEKLMTLLRLRVPPGVDEAAYVKAGFLTGIAKGEITTPL ITPTYAVELLGTMVGGYNVQSLIDILKSENSELASTAATALSKILLVYDAFNDVIKLGETNPYAKKVVDSWAAAEWFTTR PQLPEAITVTVFKVPGETNTDDLSPAPHATTRPDIPLHALAMLESKMPEGLKTIAQLKQKGHPVAYVGDIVGTGSSRKSA CNSMLWHIGEDIPFIPNKRSGGYILGGKIAPIFFNTAEDSGALPIECDVTKMETGMVITIYPYKGEIINEAGEIISTFTL KPETMLDEVRAGGRIPLLIGRTLTDKTRNILGLETSSVFTRPQLPTDTGKGFTLAQKMVGKACGLAGIRPGTACEPLMTT VGSQDTTGPMTRDEMKELACLGFSADLVMQSFCHTAAYPKPVDINTHKELPDFFSARGGVALRPGDGIIHSWLNRMLLPD TVGTGGDSHTRFPLGISFPAGSGLVAFAAALGLMPLDMPESVLVRFKGELQPGVTLRDIVNAIPYVAIQKGLLTVALENK KNVFSGRIMEMEGLPYLKVEQAFELTDATAERSCAGSTIKLGAETISEYLRSNVTLLKNMVARGYQDTRTIMRRVSKMEQ WLANPKLMSADANAEYAEIIEVDLNEIKEPIVAAPNDPDNIKLMSECAGDKIDEVFIGSCMTNIGHYRAAAKVLEGAGRV KGVLWICPPTRMDEKQLREEGIYGVFAAAGARMEMPGCSLCMGNQARVKNGVTVFSTSTRNFNNRMGKGARVYLGSAELA AVCALLGRIPSVDEYLDIMKEKVDPFAGDLYRYLNFDQIAGFEDEGRVVSLDEMPNTEDILETPVVVAK
Specific function: Catalyzes the isomerization of citrate to isocitrate via cis-aconitate as well as the dehydration of 2-methylisocitrate to cis-2-methylaconitate [H]
COG id: COG1049
COG function: function code C; Aconitase B
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aconitase/IPM isomerase family [H]
Homologues:
Organism=Escherichia coli, GI2367097, Length=859, Percent_Identity=65.8905704307334, Blast_Score=1113, Evalue=0.0, Organism=Escherichia coli, GI1786259, Length=359, Percent_Identity=27.5766016713092, Blast_Score=73, Evalue=8e-14, Organism=Saccharomyces cerevisiae, GI6321429, Length=370, Percent_Identity=24.8648648648649, Blast_Score=69, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015931 - InterPro: IPR015937 - InterPro: IPR001030 - InterPro: IPR015928 - InterPro: IPR018136 - InterPro: IPR004406 - InterPro: IPR015930 - InterPro: IPR015933 - InterPro: IPR015929 [H]
Pfam domain/function: PF00330 Aconitase; PF06434 Aconitase_2_N; PF11791 Aconitase_B_N [H]
EC number: =4.2.1.3; =4.2.1.99 [H]
Molecular weight: Translated: 94120; Mature: 94120
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: PS00450 ACONITASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLENYNNQIQQRATLGIPPLPLDAEQTSDLCELLKSPPIGTEEKLMTLLRLRVPPGVDEA CCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHH AYVKAGFLTGIAKGEITTPLITPTYAVELLGTMVGGYNVQSLIDILKSENSELASTAATA HHHHHHHHHHCCCCCCCCCEECHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHH LSKILLVYDAFNDVIKLGETNPYAKKVVDSWAAAEWFTTRPQLPEAITVTVFKVPGETNT HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCC DDLSPAPHATTRPDIPLHALAMLESKMPEGLKTIAQLKQKGHPVAYVGDIVGTGSSRKSA CCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEECHHHCCCCCHHHH CNSMLWHIGEDIPFIPNKRSGGYILGGKIAPIFFNTAEDSGALPIECDVTKMETGMVITI HHHHHHHHCCCCCCCCCCCCCCEEECCEEEEEEEECCCCCCCCEEEEECEEECCCEEEEE YPYKGEIINEAGEIISTFTLKPETMLDEVRAGGRIPLLIGRTLTDKTRNILGLETSSVFT ECCCCHHHHHHHHHHHHEECCHHHHHHHHHCCCCEEEEECCCHHHHHCCEEECCCCCCEE RPQLPTDTGKGFTLAQKMVGKACGLAGIRPGTACEPLMTTVGSQDTTGPMTRDEMKELAC CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHH LGFSADLVMQSFCHTAAYPKPVDINTHKELPDFFSARGGVALRPGDGIIHSWLNRMLLPD CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHCCCC TVGTGGDSHTRFPLGISFPAGSGLVAFAAALGLMPLDMPESVLVRFKGELQPGVTLRDIV CCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCHHHHHEECCCCCCCCCHHHHH NAIPYVAIQKGLLTVALENKKNVFSGRIMEMEGLPYLKVEQAFELTDATAERSCAGSTIK HHHHHHHHHCCEEEEEECCCCCCCCCEEEEECCCCEEEHHHHHHHHHHHHHHHCCCCEEE LGAETISEYLRSNVTLLKNMVARGYQDTRTIMRRVSKMEQWLANPKLMSADANAEYAEII ECHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHH EVDLNEIKEPIVAAPNDPDNIKLMSECAGDKIDEVFIGSCMTNIGHYRAAAKVLEGAGRV HHHHHHHCCCEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC KGVLWICPPTRMDEKQLREEGIYGVFAAAGARMEMPGCSLCMGNQARVKNGVTVFSTSTR CEEEEECCCCCCCHHHHHHCCCEEEEECCCCEECCCCCCEECCCHHHHCCCEEEEEECCC NFNNRMGKGARVYLGSAELAAVCALLGRIPSVDEYLDIMKEKVDPFAGDLYRYLNFDQIA CHHHHCCCCCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHCCHHHHC GFEDEGRVVSLDEMPNTEDILETPVVVAK CCCCCCCEEEECCCCCHHHHHHCCCEECC >Mature Secondary Structure MLENYNNQIQQRATLGIPPLPLDAEQTSDLCELLKSPPIGTEEKLMTLLRLRVPPGVDEA CCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHH AYVKAGFLTGIAKGEITTPLITPTYAVELLGTMVGGYNVQSLIDILKSENSELASTAATA HHHHHHHHHHCCCCCCCCCEECHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHH LSKILLVYDAFNDVIKLGETNPYAKKVVDSWAAAEWFTTRPQLPEAITVTVFKVPGETNT HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCC DDLSPAPHATTRPDIPLHALAMLESKMPEGLKTIAQLKQKGHPVAYVGDIVGTGSSRKSA CCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEECHHHCCCCCHHHH CNSMLWHIGEDIPFIPNKRSGGYILGGKIAPIFFNTAEDSGALPIECDVTKMETGMVITI HHHHHHHHCCCCCCCCCCCCCCEEECCEEEEEEEECCCCCCCCEEEEECEEECCCEEEEE YPYKGEIINEAGEIISTFTLKPETMLDEVRAGGRIPLLIGRTLTDKTRNILGLETSSVFT ECCCCHHHHHHHHHHHHEECCHHHHHHHHHCCCCEEEEECCCHHHHHCCEEECCCCCCEE RPQLPTDTGKGFTLAQKMVGKACGLAGIRPGTACEPLMTTVGSQDTTGPMTRDEMKELAC CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHH LGFSADLVMQSFCHTAAYPKPVDINTHKELPDFFSARGGVALRPGDGIIHSWLNRMLLPD CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHCCCC TVGTGGDSHTRFPLGISFPAGSGLVAFAAALGLMPLDMPESVLVRFKGELQPGVTLRDIV CCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCHHHHHEECCCCCCCCCHHHHH NAIPYVAIQKGLLTVALENKKNVFSGRIMEMEGLPYLKVEQAFELTDATAERSCAGSTIK HHHHHHHHHCCEEEEEECCCCCCCCCEEEEECCCCEEEHHHHHHHHHHHHHHHCCCCEEE LGAETISEYLRSNVTLLKNMVARGYQDTRTIMRRVSKMEQWLANPKLMSADANAEYAEII ECHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHH EVDLNEIKEPIVAAPNDPDNIKLMSECAGDKIDEVFIGSCMTNIGHYRAAAKVLEGAGRV HHHHHHHCCCEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC KGVLWICPPTRMDEKQLREEGIYGVFAAAGARMEMPGCSLCMGNQARVKNGVTVFSTSTR CEEEEECCCCCCCHHHHHHCCCEEEEECCCCEECCCCCCEECCCHHHHCCCEEEEEECCC NFNNRMGKGARVYLGSAELAAVCALLGRIPSVDEYLDIMKEKVDPFAGDLYRYLNFDQIA CHHHHCCCCCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHCCHHHHC GFEDEGRVVSLDEMPNTEDILETPVVVAK CCCCCCCEEEECCCCCHHHHHHCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]