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The map label for this gene is clpX

Identifier: 113474440

GI number: 113474440

Start: 936923

End: 938272

Strand: Reverse

Name: clpX

Synonym: Tery_0584

Alternate gene names: 113474440

Gene position: 938272-936923 (Counterclockwise)

Preceding gene: 113474441

Following gene: 113474437

Centisome position: 12.11

GC content: 41.78

Gene sequence:

>1350_bases
ATGTCTAAATACGACTCCCATCTAAAATGTTCATTCTGTGGCAAGTCTCAAGAGCAGGTTAGGAAATTGATAGCTGGACC
TGGAGTTTATATATGTGATGAATGTGTAGAGTTGTGCAATGAGATTTTGGATGAGGAGCTTTTTGACTCCAATGCTACAG
GAGCACAACCACCAATACCACGTCCAGCACCAGCACCCCAAAAACGAGGGACTGGTACTAAGAGATTATCTATTAGTCAA
ATACCTAAGCCTAGGGAAATAAAGAATTATCTGGATGCTCATGTTATTGGTCAGGAGGAAGGTAAGAAGGTTTTATCAGT
GGCAGTTTATAACCACTATAAACGTCTGAGTTTTCTAGAGGCCAAAAAAAGTGGTAAGTCCTCTCAAGATGAGGTGGAAT
TACAAAAGTCTAATATTTTGTTGATTGGGCCCACAGGTTGTGGAAAAACGTTGTTGGCTCAAACTTTGGCGGATTTATTG
GATGTGCCTTTTGCCGTGGCAGATGCGACGACTTTAACTGAAGCTGGATATGTTGGGGAGGACGTGGAGAATATTTTGCT
ACGACTTTTACAAGTAGCAGATTTAGAAGTGGATGAAGCACAACGGGGAATTATATATATTGATGAGATTGATAAAATAG
CTCGTAAGAGTGAGAACCCTTCTATAACAAGAGATGTTTCTGGGGAGGGTGTGCAGCAAGCCTTATTAAAGATGTTGGAG
GGAACTGTTGCTAATGTTCCTCCACAAGGTGGTCGGAAACATCCCTATCAAGATTGTATTCAGATCGATACGAGTAATAT
TTTATTTATCTGTGGTGGTGCTTTTGTTGGTTTAGAAAAGATAGTAGATCAAAGAATTGGTAAAAAGTCAATGGGCTTTA
TTCACCAGAGTGGGGACAGTTATCAGGTTAAGGAGAAAAAAGTTGTAGATTTAATGAAGCAAATGGAACCAAATGATTTG
GTGAAGTTTGGTTTGATCCCAGAATTGATTGGGCGAATACCTATGGTGGCTGTCGTTGAACCTCTCGATGAGGAGACTCT
GATGGCAATTTTGACGAAACCTCAGAATGCTCTGGTGAAGCAGTATCAAAAGCTGTTACGGATGGATAATGTGAAGTTGG
AGTTTGAGGAGGATGCTGTACGGGCGATCGCGAAGGAAGCATTTAGGAGAAAGACTGGGGCGCGAGCTTTGCGGGGTATT
GTTGAGGAGTTGATGTTGGATGTGATGTATGAGCTACCATCACGGAAGGATGTGAGTCGTTGCACTATTACTAAGGAAAT
GGTGGAAAAGCGATCAACTGCAGAGTTGTTATTGCATCCTTCGTCTTTGCCTAAACCGGAGTCAGCTTAA

Upstream 100 bases:

>100_bases
AGAAGAGGCTAAAAACTATGGCCTGATTGATCAAGTGATTACTAGACAGAATCTTCCTGTACCAGGAGAGTCTGTCCCTG
CAATGCAATAAGAGGCAGTT

Downstream 100 bases:

>100_bases
TTTATGTATTGCTTCTCGTAAGCACTTAAATAAAAAACTTCATTTGGCTACTAGGCCGACACAGCTAAAATAGTGGATTA
GCTTTTTTCTGATAATTCTT

Product: ATP-dependent protease ATP-binding subunit ClpX

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 449; Mature: 448

Protein sequence:

>449_residues
MSKYDSHLKCSFCGKSQEQVRKLIAGPGVYICDECVELCNEILDEELFDSNATGAQPPIPRPAPAPQKRGTGTKRLSISQ
IPKPREIKNYLDAHVIGQEEGKKVLSVAVYNHYKRLSFLEAKKSGKSSQDEVELQKSNILLIGPTGCGKTLLAQTLADLL
DVPFAVADATTLTEAGYVGEDVENILLRLLQVADLEVDEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLE
GTVANVPPQGGRKHPYQDCIQIDTSNILFICGGAFVGLEKIVDQRIGKKSMGFIHQSGDSYQVKEKKVVDLMKQMEPNDL
VKFGLIPELIGRIPMVAVVEPLDEETLMAILTKPQNALVKQYQKLLRMDNVKLEFEEDAVRAIAKEAFRRKTGARALRGI
VEELMLDVMYELPSRKDVSRCTITKEMVEKRSTAELLLHPSSLPKPESA

Sequences:

>Translated_449_residues
MSKYDSHLKCSFCGKSQEQVRKLIAGPGVYICDECVELCNEILDEELFDSNATGAQPPIPRPAPAPQKRGTGTKRLSISQ
IPKPREIKNYLDAHVIGQEEGKKVLSVAVYNHYKRLSFLEAKKSGKSSQDEVELQKSNILLIGPTGCGKTLLAQTLADLL
DVPFAVADATTLTEAGYVGEDVENILLRLLQVADLEVDEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLE
GTVANVPPQGGRKHPYQDCIQIDTSNILFICGGAFVGLEKIVDQRIGKKSMGFIHQSGDSYQVKEKKVVDLMKQMEPNDL
VKFGLIPELIGRIPMVAVVEPLDEETLMAILTKPQNALVKQYQKLLRMDNVKLEFEEDAVRAIAKEAFRRKTGARALRGI
VEELMLDVMYELPSRKDVSRCTITKEMVEKRSTAELLLHPSSLPKPESA
>Mature_448_residues
SKYDSHLKCSFCGKSQEQVRKLIAGPGVYICDECVELCNEILDEELFDSNATGAQPPIPRPAPAPQKRGTGTKRLSISQI
PKPREIKNYLDAHVIGQEEGKKVLSVAVYNHYKRLSFLEAKKSGKSSQDEVELQKSNILLIGPTGCGKTLLAQTLADLLD
VPFAVADATTLTEAGYVGEDVENILLRLLQVADLEVDEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEG
TVANVPPQGGRKHPYQDCIQIDTSNILFICGGAFVGLEKIVDQRIGKKSMGFIHQSGDSYQVKEKKVVDLMKQMEPNDLV
KFGLIPELIGRIPMVAVVEPLDEETLMAILTKPQNALVKQYQKLLRMDNVKLEFEEDAVRAIAKEAFRRKTGARALRGIV
EELMLDVMYELPSRKDVSRCTITKEMVEKRSTAELLLHPSSLPKPESA

Specific function: ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP

COG id: COG1219

COG function: function code O; ATP-dependent protease Clp, ATPase subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpX chaperone family

Homologues:

Organism=Homo sapiens, GI7242140, Length=336, Percent_Identity=47.6190476190476, Blast_Score=304, Evalue=1e-82,
Organism=Escherichia coli, GI1786642, Length=428, Percent_Identity=59.8130841121495, Blast_Score=494, Evalue=1e-141,
Organism=Escherichia coli, GI1790366, Length=110, Percent_Identity=40.9090909090909, Blast_Score=91, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71982908, Length=308, Percent_Identity=45.1298701298701, Blast_Score=273, Evalue=1e-73,
Organism=Caenorhabditis elegans, GI71982905, Length=308, Percent_Identity=45.1298701298701, Blast_Score=273, Evalue=2e-73,
Organism=Caenorhabditis elegans, GI71988663, Length=446, Percent_Identity=38.5650224215247, Blast_Score=265, Evalue=3e-71,
Organism=Caenorhabditis elegans, GI71988660, Length=288, Percent_Identity=39.5833333333333, Blast_Score=176, Evalue=2e-44,
Organism=Saccharomyces cerevisiae, GI6319704, Length=414, Percent_Identity=39.1304347826087, Blast_Score=275, Evalue=1e-74,
Organism=Drosophila melanogaster, GI24648291, Length=319, Percent_Identity=46.3949843260188, Blast_Score=283, Evalue=2e-76,
Organism=Drosophila melanogaster, GI24648289, Length=319, Percent_Identity=46.3949843260188, Blast_Score=283, Evalue=2e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CLPX_TRIEI (Q118P6)

Other databases:

- EMBL:   CP000393
- RefSeq:   YP_720501.1
- ProteinModelPortal:   Q118P6
- STRING:   Q118P6
- GeneID:   4244610
- GenomeReviews:   CP000393_GR
- KEGG:   ter:Tery_0584
- NMPDR:   fig|203124.1.peg.3579
- eggNOG:   COG1219
- HOGENOM:   HBG745965
- OMA:   CGKSQEQ
- PhylomeDB:   Q118P6
- ProtClustDB:   PRK05342
- BioCyc:   TERY203124:TERY_0584-MONOMER
- HAMAP:   MF_00175
- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR019489
- InterPro:   IPR004487
- InterPro:   IPR010603
- PANTHER:   PTHR11262:SF4
- SMART:   SM00382
- TIGRFAMs:   TIGR00382

Pfam domain/function: PF07724 AAA_2; PF10431 ClpB_D2-small; PF06689 zf-C4_ClpX

EC number: NA

Molecular weight: Translated: 49770; Mature: 49639

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKYDSHLKCSFCGKSQEQVRKLIAGPGVYICDECVELCNEILDEELFDSNATGAQPPIP
CCCCCCCCEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
RPAPAPQKRGTGTKRLSISQIPKPREIKNYLDAHVIGQEEGKKVLSVAVYNHYKRLSFLE
CCCCCCCCCCCCCCEEEHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
AKKSGKSSQDEVELQKSNILLIGPTGCGKTLLAQTLADLLDVPFAVADATTLTEAGYVGE
HHHCCCCCCHHHHEECCCEEEEECCCCCHHHHHHHHHHHHCCCHHHHCHHHHHHCCCCCH
DVENILLRLLQVADLEVDEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLE
HHHHHHHHHHHHHCCCHHHHCCCEEEEHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHC
GTVANVPPQGGRKHPYQDCIQIDTSNILFICGGAFVGLEKIVDQRIGKKSMGFIHQSGDS
CHHCCCCCCCCCCCCHHHHHEECCCCEEEEECCHHHHHHHHHHHHHCHHHHCHHCCCCCC
YQVKEKKVVDLMKQMEPNDLVKFGLIPELIGRIPMVAVVEPLDEETLMAILTKPQNALVK
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEHCCCCCHHHHHHHHCCCHHHHHH
QYQKLLRMDNVKLEFEEDAVRAIAKEAFRRKTGARALRGIVEELMLDVMYELPSRKDVSR
HHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
CTITKEMVEKRSTAELLLHPSSLPKPESA
HHHHHHHHHCCCCHHHEECCCCCCCCCCC
>Mature Secondary Structure 
SKYDSHLKCSFCGKSQEQVRKLIAGPGVYICDECVELCNEILDEELFDSNATGAQPPIP
CCCCCCCEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
RPAPAPQKRGTGTKRLSISQIPKPREIKNYLDAHVIGQEEGKKVLSVAVYNHYKRLSFLE
CCCCCCCCCCCCCCEEEHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
AKKSGKSSQDEVELQKSNILLIGPTGCGKTLLAQTLADLLDVPFAVADATTLTEAGYVGE
HHHCCCCCCHHHHEECCCEEEEECCCCCHHHHHHHHHHHHCCCHHHHCHHHHHHCCCCCH
DVENILLRLLQVADLEVDEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLE
HHHHHHHHHHHHHCCCHHHHCCCEEEEHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHC
GTVANVPPQGGRKHPYQDCIQIDTSNILFICGGAFVGLEKIVDQRIGKKSMGFIHQSGDS
CHHCCCCCCCCCCCCHHHHHEECCCCEEEEECCHHHHHHHHHHHHHCHHHHCHHCCCCCC
YQVKEKKVVDLMKQMEPNDLVKFGLIPELIGRIPMVAVVEPLDEETLMAILTKPQNALVK
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEHCCCCCHHHHHHHHCCCHHHHHH
QYQKLLRMDNVKLEFEEDAVRAIAKEAFRRKTGARALRGIVEELMLDVMYELPSRKDVSR
HHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
CTITKEMVEKRSTAELLLHPSSLPKPESA
HHHHHHHHHCCCCHHHEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA