| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474394
Identifier: 113474394
GI number: 113474394
Start: 838332
End: 839417
Strand: Direct
Name: 113474394
Synonym: Tery_0530
Alternate gene names: NA
Gene position: 838332-839417 (Clockwise)
Preceding gene: 113474393
Following gene: 113474395
Centisome position: 10.82
GC content: 31.58
Gene sequence:
>1086_bases ATGATGACTTCACAATTCTATAGTTCAAAATATTTCTCTGAAACTTATAACGAAGCCAGAAATAAATTTTGTGATGCCGC AAAAGCTGCAAATGCAAAACTTGAAACAATCGAATTATATTCTCAAAATTGCCCAAATAATTCTTTATATACTGATATAG CATGGTTAGGAAATTCCAAGCCTCATAATGTAATCTTGCATTCTTCAGGTTTACATGGAGTCGAGGGGTTTGCTGGTTCA GCAATACAAACCTGTCTCTTAAAAAATTTACCCGTTTTAAGGGATGAAGATGCATTAATTCTAGTACATTGTTTAAATCC TTATGGAATGATCAACTTGCGTCGTGTTAATGCTTCAAACGTTGATTTAAATCGAAACTTTTTATTTTCCAGTGACGAGT ATACCGGTTCTCCAGATATCTATAGTAAGATTAACTCCTTAATTAACCCTGACTCTCCTCCAGCATTTGATTTATTTTTT CTCAGAGCATTAGCAATAATTCTAAAATATGGTTTTGTAGCTGTTAAGCAAGCAGTAGCAAATGGTCAATATGATTTTCC CAAAGGATTATTTTTTGGTGGAATAGAACTTCAGGAAGAATTAGTAAATTATAAGGAGTGGCTTCTCAAAAACTTACCTT TAGTCAAAAATATTTGTGCCATAGACGTTCATACAGGTTTAGGTCGTTTTGCCGATGATTTACTTCTTATAGAAGAAAAT TGTTCTCATTCAGATTTGGAAAAACTGCAAAAACACTTTGGTAAAGAAAGAATAAAAACACTAAATCCCAATAAATCTGT AGCTTATAGCATAAAAGGTAGTATCTCTGAAGCTATTCCTCAACTTTTAAATCAAGCAAAAGTTAATTTATTAACACAAG AATTTGGCACTGTTTCACCTATTTCGGTTCTTTTTGCATTACGAGAGGAAAATAGAAATTATTATTATAGTAAAAATGAT CAGTCCTATTCATCAGTTAAGACTAGACTTAAAGAGGCTTTTTACCCTTCTTCAAATATATGGAGAAAAAAAGTTTTGTT GAAAGGAGTTCAATTAGTACACCAATCAACTAAATTTATCTCTTAA
Upstream 100 bases:
>100_bases CACGCAGGTGATAGCAGGTAGTGTTCAACTGGGGGTTAAGCTTGACCGAATGCACCTGACCGGAATGGTTGTAAACCTAC TATTCTATTAAATTTATATT
Downstream 100 bases:
>100_bases TACTTATTATTACCTTATTAATAAAGAACTTTAACTATAGCTATACAATAAACTATACACTATAAATTAAAACAAAACTC AAACATTTAAAGAGCTGTAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 361; Mature: 361
Protein sequence:
>361_residues MMTSQFYSSKYFSETYNEARNKFCDAAKAANAKLETIELYSQNCPNNSLYTDIAWLGNSKPHNVILHSSGLHGVEGFAGS AIQTCLLKNLPVLRDEDALILVHCLNPYGMINLRRVNASNVDLNRNFLFSSDEYTGSPDIYSKINSLINPDSPPAFDLFF LRALAIILKYGFVAVKQAVANGQYDFPKGLFFGGIELQEELVNYKEWLLKNLPLVKNICAIDVHTGLGRFADDLLLIEEN CSHSDLEKLQKHFGKERIKTLNPNKSVAYSIKGSISEAIPQLLNQAKVNLLTQEFGTVSPISVLFALREENRNYYYSKND QSYSSVKTRLKEAFYPSSNIWRKKVLLKGVQLVHQSTKFIS
Sequences:
>Translated_361_residues MMTSQFYSSKYFSETYNEARNKFCDAAKAANAKLETIELYSQNCPNNSLYTDIAWLGNSKPHNVILHSSGLHGVEGFAGS AIQTCLLKNLPVLRDEDALILVHCLNPYGMINLRRVNASNVDLNRNFLFSSDEYTGSPDIYSKINSLINPDSPPAFDLFF LRALAIILKYGFVAVKQAVANGQYDFPKGLFFGGIELQEELVNYKEWLLKNLPLVKNICAIDVHTGLGRFADDLLLIEEN CSHSDLEKLQKHFGKERIKTLNPNKSVAYSIKGSISEAIPQLLNQAKVNLLTQEFGTVSPISVLFALREENRNYYYSKND QSYSSVKTRLKEAFYPSSNIWRKKVLLKGVQLVHQSTKFIS >Mature_361_residues MMTSQFYSSKYFSETYNEARNKFCDAAKAANAKLETIELYSQNCPNNSLYTDIAWLGNSKPHNVILHSSGLHGVEGFAGS AIQTCLLKNLPVLRDEDALILVHCLNPYGMINLRRVNASNVDLNRNFLFSSDEYTGSPDIYSKINSLINPDSPPAFDLFF LRALAIILKYGFVAVKQAVANGQYDFPKGLFFGGIELQEELVNYKEWLLKNLPLVKNICAIDVHTGLGRFADDLLLIEEN CSHSDLEKLQKHFGKERIKTLNPNKSVAYSIKGSISEAIPQLLNQAKVNLLTQEFGTVSPISVLFALREENRNYYYSKND QSYSSVKTRLKEAFYPSSNIWRKKVLLKGVQLVHQSTKFIS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40733; Mature: 40733
Theoretical pI: Translated: 8.52; Mature: 8.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMTSQFYSSKYFSETYNEARNKFCDAAKAANAKLETIELYSQNCPNNSLYTDIAWLGNSK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEHHCCCCCC PHNVILHSSGLHGVEGFAGSAIQTCLLKNLPVLRDEDALILVHCLNPYGMINLRRVNASN CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEEECCCC VDLNRNFLFSSDEYTGSPDIYSKINSLINPDSPPAFDLFFLRALAIILKYGFVAVKQAVA CCCCCCEEECCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH NGQYDFPKGLFFGGIELQEELVNYKEWLLKNLPLVKNICAIDVHTGLGRFADDLLLIEEN CCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCHHHHHHEEECHHCHHHHHHCEEEEECC CSHSDLEKLQKHFGKERIKTLNPNKSVAYSIKGSISEAIPQLLNQAKVNLLTQEFGTVSP CCHHHHHHHHHHHCHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCH ISVLFALREENRNYYYSKNDQSYSSVKTRLKEAFYPSSNIWRKKVLLKGVQLVHQSTKFI HHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC S C >Mature Secondary Structure MMTSQFYSSKYFSETYNEARNKFCDAAKAANAKLETIELYSQNCPNNSLYTDIAWLGNSK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEHHCCCCCC PHNVILHSSGLHGVEGFAGSAIQTCLLKNLPVLRDEDALILVHCLNPYGMINLRRVNASN CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEEECCCC VDLNRNFLFSSDEYTGSPDIYSKINSLINPDSPPAFDLFFLRALAIILKYGFVAVKQAVA CCCCCCEEECCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH NGQYDFPKGLFFGGIELQEELVNYKEWLLKNLPLVKNICAIDVHTGLGRFADDLLLIEEN CCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCHHHHHHEEECHHCHHHHHHCEEEEECC CSHSDLEKLQKHFGKERIKTLNPNKSVAYSIKGSISEAIPQLLNQAKVNLLTQEFGTVSP CCHHHHHHHHHHHCHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCH ISVLFALREENRNYYYSKNDQSYSSVKTRLKEAFYPSSNIWRKKVLLKGVQLVHQSTKFI HHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC S C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA