| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474353
Identifier: 113474353
GI number: 113474353
Start: 775464
End: 778196
Strand: Reverse
Name: 113474353
Synonym: Tery_0485
Alternate gene names: NA
Gene position: 778196-775464 (Counterclockwise)
Preceding gene: 113474363
Following gene: 113474352
Centisome position: 10.04
GC content: 39.19
Gene sequence:
>2733_bases GTGGCAGTAGCATTAGAGAGTTTACTTACACCCCATATCCACAAACCAGCTCGTTACCTTGGTAATGAGTTTGGTGCTTT TCATAAGCCTTGGGACAGTTCTCAAGTGCGCTGGGTATTGAGTTACCCAGAAGTTTATGAAGTAGGAGCTTCTAATTTAG GACATATAATTCTTTACAATATCTTGAATTCTCAGCCACGACAACTATGTGATCGCGCATATTTACCAGCTCCAGATTTA GCAGAAAAATTGCGGGCCACAGAAACTCCACTATTTGCTGTAGAATCAAGGCAATCATTGATTCATTTCGATATTCTAGG CTTTAATCTTAGCTATGAATTAGGAGCGACAAATATTCTAGAGATGCTAAGTTTGGCTGGTATCCCATTAACTTGGCAAG AACGGCTTAAACTAGGGAATAGAGATGAAGACAAATTTCCTTTAATTTTTGCAGGTGGCCAAACAGCAACTTCTAACCCT GAACCTTATGCAGACTTTTTTGACTTTATTGCTTTAGGAGATGGAGAAGAGTTACTTCCAGAAATTGGACTAATAGTTGA CGAGGGTAAGAAGGGTAGATTAACCAGAGAAGAATTACTTTTGGACTTAGCCCAAATTCCCGGTGTTTATGTGCCACAAT TTTATAGCATGGCTGAAGATGGCTCAGTCTTCCCAACTCGTCATGATGTGCCAAGAACGATACTGCGTCGAGTTGCAACT CCTATGCCGGCTTATTCTATAGGTTTGGTTCCTTATGTAGAAACAGTCCATGATCGACTGGTAATAGAAGTTCGACGTGG TTGCACTAGAGGTTGTCGCTTTTGTCAACCAGGTATGTTAACTAGACCAGCACGAGATGTGGAACCAGAACAAGTAGTGG ATACTATTGAAAAAGGTATAACTGCAACTGGACATAATGAGTTCTCTTTACTTTCCTTGAGTTGTTCTGATTATTTGGCT TTACCAGCAGTGGGAACTGAAATTAGAAACCGTTTCCAGGATGAAAATATTTCTTTATCTCTACCAAGTCAGCGAGTAGA TAGATTTGATAAAAATATTGCCAATATTATTGGTGGTGGTCACCAAAGTAGTTTGACATTTGCTCCAGAAGCAGGTACCC AACGAATGCGGGACATTGTAAATAAGGGATTGACAAATGAGGAACTTTTACGGGGAGTAAAAACTGCTTATGACCAAGGT TGGGATAAAGTTAAGCTCTATTTTATGATTGGTTTGCCTGGAGAAACTGATGCTGATGTGTTAGGTATCGCCGAAACAGT TAATTGGTTGCAGCAAGAATGCCGAGCTAAAGGTCGGAGAAAGCTACAGGTTACTTTAACAATTTCTAATTTTACCCCGA AGCCTCATACTCCTTTTCAATGGCATTCGGTTTCTGTGACTGAGTTTGAACGTAAGCAAGAATTGCTAAAGGCAGAATTT CGGAGGATGAAAGGTGTAAAAGCCAATTTTACCGATGTCCGTCTCTCAGCAATGGAGGATTTTCTGGGTAGAGGCGATCG CCGTTTAGCATCTGTAATTCTGCGTGCTTGGGAACGAGGCGCTGGCATGGACTCTTGGTGGGAAAGTTTGGATAGAGCTT TTGCTGCATGGAGTGATGCTATTGCAGAATCAGACTTGAGTTGGAAGTACCGTCAAGTAGAAAAGGGTGAGTGGAATGTA TTTTCAAATACAGAAGAAAATTTTAATATATGGAATGAAGACCAAGTCAATTCCCGACTTAACCAACCCCTACCTTGGGA TCATATAGATACTGGAATTGATAAAAATTGGCTCAAAGAAGATTTGCACAAAGCTTTGGCAGAAGTAACTGTTCCTGATT GCTCCTTTGGGACTTGTTCTCATTGTGGTGTTTGTGGTCCAGATCTAGGTCATAATATTGTTATTCCACCACCACCAATT CCCAAGTTTGTAGGTCAGTTTGTCCCTAATCAAAATCGGGTACAACGTCTACGAGTTTGGTTTGGGAAATTAGGAGAAAT GGCCTTAGTAAGTCATCTAGATTTAGCGAGGTTATTTGCTCGTATTGTTCGTCGGAGTAATATACCTATTGCCTTTAGCG GAGGATATCATCCAAGTCCACGAATTGTTCTAGCTAGTGCTTTATCTCTAGGAGTAACTAGTACAGGAGAAGTAGTGGAT TTTGAGTTGACAGAAACAATAGATGTGTTAGGATTTCAGAAGAAGCTAGAGAGTCAATTGCCAGTTGGTATACCTATATA TAAGGTAGAAGAGGTAGAAGTTAAGAGTCCTTCTTTATCTCAGACATTGGAGAAAGCAGAGTATATTTTGAGGGTCAGTA AAACTAATGATTCTACAAAAGATTTGATACAAGACTGCAATACTATAAGAGAAGTTGAGGAAAATGACTGTTCTAACCTA AATTGGCAAGGGTGGGTAGAGGCAATTAAAAATAGGGAATTAATTCTTTGGGAACAAAAAACAAAGTCGGGTAAGGTCAA AGTTATTAACTTACGTGATCGTTTATTTGAATTGGAGTTTTTAGAGTATCCAACAACCTTAAATTTTTGCATACCTTGGT CTTATGAGTCTAATTCGTATTATGAAACTGATGCCATTATTCGTTATGTAGGAAGCTATCAGAATGATGGAACTTTACTA AGACCACAAAATATAATTTATATGCTGAAAGAAGTCAGTAAGCTAGAGTTTGAATTGGTATATACTCATAGGCAAAAGTT GTTTTTGAGGTAA
Upstream 100 bases:
>100_bases GCCAAAATGAGGAAGGTCTATGAATTCTAGTTTAACACCATAAGTTTTGGTGCTATCTTGATAATATGTATAACTTAAAA ATATACCTTAAATACTAATA
Downstream 100 bases:
>100_bases TAAAATTTAATGTTAATGGAAACCTATTAAGAGGGTATCTATAAGTAAAACATTAAATTATGGTATGGGGTGAGTATCAA AAGCGCAAAAAGAAAGGGCA
Product: radical SAM family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 910; Mature: 909
Protein sequence:
>910_residues MAVALESLLTPHIHKPARYLGNEFGAFHKPWDSSQVRWVLSYPEVYEVGASNLGHIILYNILNSQPRQLCDRAYLPAPDL AEKLRATETPLFAVESRQSLIHFDILGFNLSYELGATNILEMLSLAGIPLTWQERLKLGNRDEDKFPLIFAGGQTATSNP EPYADFFDFIALGDGEELLPEIGLIVDEGKKGRLTREELLLDLAQIPGVYVPQFYSMAEDGSVFPTRHDVPRTILRRVAT PMPAYSIGLVPYVETVHDRLVIEVRRGCTRGCRFCQPGMLTRPARDVEPEQVVDTIEKGITATGHNEFSLLSLSCSDYLA LPAVGTEIRNRFQDENISLSLPSQRVDRFDKNIANIIGGGHQSSLTFAPEAGTQRMRDIVNKGLTNEELLRGVKTAYDQG WDKVKLYFMIGLPGETDADVLGIAETVNWLQQECRAKGRRKLQVTLTISNFTPKPHTPFQWHSVSVTEFERKQELLKAEF RRMKGVKANFTDVRLSAMEDFLGRGDRRLASVILRAWERGAGMDSWWESLDRAFAAWSDAIAESDLSWKYRQVEKGEWNV FSNTEENFNIWNEDQVNSRLNQPLPWDHIDTGIDKNWLKEDLHKALAEVTVPDCSFGTCSHCGVCGPDLGHNIVIPPPPI PKFVGQFVPNQNRVQRLRVWFGKLGEMALVSHLDLARLFARIVRRSNIPIAFSGGYHPSPRIVLASALSLGVTSTGEVVD FELTETIDVLGFQKKLESQLPVGIPIYKVEEVEVKSPSLSQTLEKAEYILRVSKTNDSTKDLIQDCNTIREVEENDCSNL NWQGWVEAIKNRELILWEQKTKSGKVKVINLRDRLFELEFLEYPTTLNFCIPWSYESNSYYETDAIIRYVGSYQNDGTLL RPQNIIYMLKEVSKLEFELVYTHRQKLFLR
Sequences:
>Translated_910_residues MAVALESLLTPHIHKPARYLGNEFGAFHKPWDSSQVRWVLSYPEVYEVGASNLGHIILYNILNSQPRQLCDRAYLPAPDL AEKLRATETPLFAVESRQSLIHFDILGFNLSYELGATNILEMLSLAGIPLTWQERLKLGNRDEDKFPLIFAGGQTATSNP EPYADFFDFIALGDGEELLPEIGLIVDEGKKGRLTREELLLDLAQIPGVYVPQFYSMAEDGSVFPTRHDVPRTILRRVAT PMPAYSIGLVPYVETVHDRLVIEVRRGCTRGCRFCQPGMLTRPARDVEPEQVVDTIEKGITATGHNEFSLLSLSCSDYLA LPAVGTEIRNRFQDENISLSLPSQRVDRFDKNIANIIGGGHQSSLTFAPEAGTQRMRDIVNKGLTNEELLRGVKTAYDQG WDKVKLYFMIGLPGETDADVLGIAETVNWLQQECRAKGRRKLQVTLTISNFTPKPHTPFQWHSVSVTEFERKQELLKAEF RRMKGVKANFTDVRLSAMEDFLGRGDRRLASVILRAWERGAGMDSWWESLDRAFAAWSDAIAESDLSWKYRQVEKGEWNV FSNTEENFNIWNEDQVNSRLNQPLPWDHIDTGIDKNWLKEDLHKALAEVTVPDCSFGTCSHCGVCGPDLGHNIVIPPPPI PKFVGQFVPNQNRVQRLRVWFGKLGEMALVSHLDLARLFARIVRRSNIPIAFSGGYHPSPRIVLASALSLGVTSTGEVVD FELTETIDVLGFQKKLESQLPVGIPIYKVEEVEVKSPSLSQTLEKAEYILRVSKTNDSTKDLIQDCNTIREVEENDCSNL NWQGWVEAIKNRELILWEQKTKSGKVKVINLRDRLFELEFLEYPTTLNFCIPWSYESNSYYETDAIIRYVGSYQNDGTLL RPQNIIYMLKEVSKLEFELVYTHRQKLFLR >Mature_909_residues AVALESLLTPHIHKPARYLGNEFGAFHKPWDSSQVRWVLSYPEVYEVGASNLGHIILYNILNSQPRQLCDRAYLPAPDLA EKLRATETPLFAVESRQSLIHFDILGFNLSYELGATNILEMLSLAGIPLTWQERLKLGNRDEDKFPLIFAGGQTATSNPE PYADFFDFIALGDGEELLPEIGLIVDEGKKGRLTREELLLDLAQIPGVYVPQFYSMAEDGSVFPTRHDVPRTILRRVATP MPAYSIGLVPYVETVHDRLVIEVRRGCTRGCRFCQPGMLTRPARDVEPEQVVDTIEKGITATGHNEFSLLSLSCSDYLAL PAVGTEIRNRFQDENISLSLPSQRVDRFDKNIANIIGGGHQSSLTFAPEAGTQRMRDIVNKGLTNEELLRGVKTAYDQGW DKVKLYFMIGLPGETDADVLGIAETVNWLQQECRAKGRRKLQVTLTISNFTPKPHTPFQWHSVSVTEFERKQELLKAEFR RMKGVKANFTDVRLSAMEDFLGRGDRRLASVILRAWERGAGMDSWWESLDRAFAAWSDAIAESDLSWKYRQVEKGEWNVF SNTEENFNIWNEDQVNSRLNQPLPWDHIDTGIDKNWLKEDLHKALAEVTVPDCSFGTCSHCGVCGPDLGHNIVIPPPPIP KFVGQFVPNQNRVQRLRVWFGKLGEMALVSHLDLARLFARIVRRSNIPIAFSGGYHPSPRIVLASALSLGVTSTGEVVDF ELTETIDVLGFQKKLESQLPVGIPIYKVEEVEVKSPSLSQTLEKAEYILRVSKTNDSTKDLIQDCNTIREVEENDCSNLN WQGWVEAIKNRELILWEQKTKSGKVKVINLRDRLFELEFLEYPTTLNFCIPWSYESNSYYETDAIIRYVGSYQNDGTLLR PQNIIYMLKEVSKLEFELVYTHRQKLFLR
Specific function: Unknown
COG id: COG1032
COG function: function code C; Fe-S oxidoreductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006638 - InterPro: IPR005839 - InterPro: IPR007197 [H]
Pfam domain/function: PF04055 Radical_SAM [H]
EC number: NA
Molecular weight: Translated: 103377; Mature: 103246
Theoretical pI: Translated: 5.61; Mature: 5.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVALESLLTPHIHKPARYLGNEFGAFHKPWDSSQVRWVLSYPEVYEVGASNLGHIILYN CCCCHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCEEEEH ILNSQPRQLCDRAYLPAPDLAEKLRATETPLFAVESRQSLIHFDILGFNLSYELGATNIL HHCCCHHHHHHHCCCCCCHHHHHHHHCCCCEEEECCCCCEEEEEEEEEEEEECCCHHHHH EMLSLAGIPLTWQERLKLGNRDEDKFPLIFAGGQTATSNPEPYADFFDFIALGDGEELLP HHHHHCCCCCCHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCHHHHH EIGLIVDEGKKGRLTREELLLDLAQIPGVYVPQFYSMAEDGSVFPTRHDVPRTILRRVAT HHCEEEECCCCCCCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHCC PMPAYSIGLVPYVETVHDRLVIEVRRGCTRGCRFCQPGMLTRPARDVEPEQVVDTIEKGI CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC TATGHNEFSLLSLSCSDYLALPAVGTEIRNRFQDENISLSLPSQRVDRFDKNIANIIGGG EECCCCCEEEEEECCCCCEECCCCCHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHCCC HQSSLTFAPEAGTQRMRDIVNKGLTNEELLRGVKTAYDQGWDKVKLYFMIGLPGETDADV CCCCEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCHH LGIAETVNWLQQECRAKGRRKLQVTLTISNFTPKPHTPFQWHSVSVTEFERKQELLKAEF HHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCEECCCHHHHHHHHHHHHHHH RRMKGVKANFTDVRLSAMEDFLGRGDRRLASVILRAWERGAGMDSWWESLDRAFAAWSDA HHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH IAESDLSWKYRQVEKGEWNVFSNTEENFNIWNEDQVNSRLNQPLPWDHIDTGIDKNWLKE HHHCCCCCHHHHCCCCCCCEECCCCCCCCCCCCHHHHHHCCCCCCCCHHHCCCCHHHHHH DLHKALAEVTVPDCSFGTCSHCGVCGPDLGHNIVIPPPPIPKFVGQFVPNQNRVQRLRVW HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCHHHHHHHHHH FGKLGEMALVSHLDLARLFARIVRRSNIPIAFSGGYHPSPRIVLASALSLGVTSTGEVVD HHHHCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCEEE FELTETIDVLGFQKKLESQLPVGIPIYKVEEVEVKSPSLSQTLEKAEYILRVSKTNDSTK EEHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHEEEECCCCHHH DLIQDCNTIREVEENDCSNLNWQGWVEAIKNRELILWEQKTKSGKVKVINLRDRLFELEF HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCEEEEEHHHHHHHHHH LEYPTTLNFCIPWSYESNSYYETDAIIRYVGSYQNDGTLLRPQNIIYMLKEVSKLEFELV HCCCCEEEEEEEECCCCCCEEHHHHHHHHHHCCCCCCCEECCHHHHHHHHHHHHHHEEEE YTHRQKLFLR EEHHHHHCCC >Mature Secondary Structure AVALESLLTPHIHKPARYLGNEFGAFHKPWDSSQVRWVLSYPEVYEVGASNLGHIILYN CCCHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCEEEEH ILNSQPRQLCDRAYLPAPDLAEKLRATETPLFAVESRQSLIHFDILGFNLSYELGATNIL HHCCCHHHHHHHCCCCCCHHHHHHHHCCCCEEEECCCCCEEEEEEEEEEEEECCCHHHHH EMLSLAGIPLTWQERLKLGNRDEDKFPLIFAGGQTATSNPEPYADFFDFIALGDGEELLP HHHHHCCCCCCHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCHHHHH EIGLIVDEGKKGRLTREELLLDLAQIPGVYVPQFYSMAEDGSVFPTRHDVPRTILRRVAT HHCEEEECCCCCCCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHCC PMPAYSIGLVPYVETVHDRLVIEVRRGCTRGCRFCQPGMLTRPARDVEPEQVVDTIEKGI CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC TATGHNEFSLLSLSCSDYLALPAVGTEIRNRFQDENISLSLPSQRVDRFDKNIANIIGGG EECCCCCEEEEEECCCCCEECCCCCHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHCCC HQSSLTFAPEAGTQRMRDIVNKGLTNEELLRGVKTAYDQGWDKVKLYFMIGLPGETDADV CCCCEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCHH LGIAETVNWLQQECRAKGRRKLQVTLTISNFTPKPHTPFQWHSVSVTEFERKQELLKAEF HHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCEECCCHHHHHHHHHHHHHHH RRMKGVKANFTDVRLSAMEDFLGRGDRRLASVILRAWERGAGMDSWWESLDRAFAAWSDA HHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH IAESDLSWKYRQVEKGEWNVFSNTEENFNIWNEDQVNSRLNQPLPWDHIDTGIDKNWLKE HHHCCCCCHHHHCCCCCCCEECCCCCCCCCCCCHHHHHHCCCCCCCCHHHCCCCHHHHHH DLHKALAEVTVPDCSFGTCSHCGVCGPDLGHNIVIPPPPIPKFVGQFVPNQNRVQRLRVW HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCHHHHHHHHHH FGKLGEMALVSHLDLARLFARIVRRSNIPIAFSGGYHPSPRIVLASALSLGVTSTGEVVD HHHHCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCEEE FELTETIDVLGFQKKLESQLPVGIPIYKVEEVEVKSPSLSQTLEKAEYILRVSKTNDSTK EEHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHEEEECCCCHHH DLIQDCNTIREVEENDCSNLNWQGWVEAIKNRELILWEQKTKSGKVKVINLRDRLFELEF HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCEEEEEHHHHHHHHHH LEYPTTLNFCIPWSYESNSYYETDAIIRYVGSYQNDGTLLRPQNIIYMLKEVSKLEFELV HCCCCEEEEEEEECCCCCCEEHHHHHHHHHHCCCCCCCEECCHHHHHHHHHHHHHHEEEE YTHRQKLFLR EEHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]