| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474307
Identifier: 113474307
GI number: 113474307
Start: 687517
End: 688122
Strand: Direct
Name: 113474307
Synonym: Tery_0436
Alternate gene names: NA
Gene position: 687517-688122 (Clockwise)
Preceding gene: 113474302
Following gene: 113474309
Centisome position: 8.87
GC content: 38.45
Gene sequence:
>606_bases ATGGAATTAAAAACTTCTCCCAATCCATCTAAACCATTGATATTGGATAACCTACCAAATATATCTCTCCCTAATAGTGG GTGTCCCCGAAGAACTAAGACTCAAATCGATTTAATGCTTTTGGCAATTGAAGCCCTACAACTAGGAGGAGCTGAAGCTA TGCTGAAAGTTGTCAAAGAACTGGAACTACAAGAGATTATTCTATCTCGGGTAGTTTTGTGGCGACTGCGTAGTACAAAT CCTTTACGTCAAAACAGCCAACGCCTTCCCTTGACACTGATCGAAGCGAAAGCCCTAGTAATTATTGTTTGTTACTTGGC CAAACGCTTAACTGTTCCAATTAGGAAACTTTTGCTTGACTATCAGCAGTTAAGCCAAAAACAGTTACCGATAGAAAGTC ATTTACAATTATCCTTTTATTTAGAACAGTTTAGAGTACACTTTCGTAGCCGTATGAATCCTAGACGCTCTGGTGTAATG GCCTATAATTCGGAGGAAAAGTTAAATCAACTAGGGTTAGAATTATTGAGTAAATTACTATTTTGTACTGGTACCAGAGG TATGCAGCGGTTTTGGATAAGTCTGTTTGATGGAGAAGTTACTTGA
Upstream 100 bases:
>100_bases TGTTATTATTTAGTTTTTTTTGAGCATAGATAGTTTTTTAACTGTCTTGATATTTTTACCAAAATAGTGTAAAGAAGTAT AGAATATTGCTGTAAAAGTA
Downstream 100 bases:
>100_bases TATCTTCCCCTGCTATTAGGTACAGGGGAGTTAGTGGTAACCGAACCTCAAGGGCGGACCGAGGTGTTGCACTTACTAAG TGCTCCGGGTTGTTTGTGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 201; Mature: 201
Protein sequence:
>201_residues MELKTSPNPSKPLILDNLPNISLPNSGCPRRTKTQIDLMLLAIEALQLGGAEAMLKVVKELELQEIILSRVVLWRLRSTN PLRQNSQRLPLTLIEAKALVIIVCYLAKRLTVPIRKLLLDYQQLSQKQLPIESHLQLSFYLEQFRVHFRSRMNPRRSGVM AYNSEEKLNQLGLELLSKLLFCTGTRGMQRFWISLFDGEVT
Sequences:
>Translated_201_residues MELKTSPNPSKPLILDNLPNISLPNSGCPRRTKTQIDLMLLAIEALQLGGAEAMLKVVKELELQEIILSRVVLWRLRSTN PLRQNSQRLPLTLIEAKALVIIVCYLAKRLTVPIRKLLLDYQQLSQKQLPIESHLQLSFYLEQFRVHFRSRMNPRRSGVM AYNSEEKLNQLGLELLSKLLFCTGTRGMQRFWISLFDGEVT >Mature_201_residues MELKTSPNPSKPLILDNLPNISLPNSGCPRRTKTQIDLMLLAIEALQLGGAEAMLKVVKELELQEIILSRVVLWRLRSTN PLRQNSQRLPLTLIEAKALVIIVCYLAKRLTVPIRKLLLDYQQLSQKQLPIESHLQLSFYLEQFRVHFRSRMNPRRSGVM AYNSEEKLNQLGLELLSKLLFCTGTRGMQRFWISLFDGEVT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23110; Mature: 23110
Theoretical pI: Translated: 10.42; Mature: 10.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELKTSPNPSKPLILDNLPNISLPNSGCPRRTKTQIDLMLLAIEALQLGGAEAMLKVVKE CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH LELQEIILSRVVLWRLRSTNPLRQNSQRLPLTLIEAKALVIIVCYLAKRLTVPIRKLLLD HHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YQQLSQKQLPIESHLQLSFYLEQFRVHFRSRMNPRRSGVMAYNSEEKLNQLGLELLSKLL HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHH FCTGTRGMQRFWISLFDGEVT HHCCCHHHHHHHHHHHCCCCC >Mature Secondary Structure MELKTSPNPSKPLILDNLPNISLPNSGCPRRTKTQIDLMLLAIEALQLGGAEAMLKVVKE CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH LELQEIILSRVVLWRLRSTNPLRQNSQRLPLTLIEAKALVIIVCYLAKRLTVPIRKLLLD HHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YQQLSQKQLPIESHLQLSFYLEQFRVHFRSRMNPRRSGVMAYNSEEKLNQLGLELLSKLL HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHH FCTGTRGMQRFWISLFDGEVT HHCCCHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA