| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is yeiH [C]
Identifier: 113474220
GI number: 113474220
Start: 510841
End: 512151
Strand: Direct
Name: yeiH [C]
Synonym: Tery_0334
Alternate gene names: 113474220
Gene position: 510841-512151 (Clockwise)
Preceding gene: 113474219
Following gene: 113474222
Centisome position: 6.59
GC content: 39.89
Gene sequence:
>1311_bases ATGAGTAAAACAAAATGGTCTGATTTATACAAATTAGAAGACTGGTGGGCAGTCTGGATCGGTTTGTTACTGTTAGCAAG TGTATTTAGTGGATGGGTAACACTTGTACCCAAAATTCCTAAATGGAAAGGAATAGATATTCTGGCTGCACTCCCGATAG ATTTAATTCCTAGCTTAGTATTATTAGCGATCGCTCTGTGCGCTGTATTTACATTTGGCAACATTTTGATGCAGGGGCGT AGGGCAAATGCTATGATACCAGGATTTTTGGCCATCTTTATCTTAGCTACTCTCGCTTATGTATTGGGAAATTCTCAAGC TGCAAAAGCAATAAATCTCGGTTATGCCTTCTGGGCACTACTAATAGGATTATTAATTAGTAATACAGTAGGTACGCCAG AATGGTTGAAACCTGCCGTGCGCACCGAATACTATATTAAAACTGGGTTAGTCATTTTGGGAGCAGAAATTCTGTTTAGT CGCATTGTCGAATTCGGACCCTATGGTTTAGCGATAGCCTGGGGAGTCACGCCAATAGTAGTGATATTCATGTATTTATT TGGCACTCGCATCCTGAAAATGCAGCAAAAAACATTAGTAATGATAGTAGCAACTTCAACCTCTGTCTGTGGAGTCTCGG CAGCTATTGCAGCTGCAGCAGCTTGTCGCGCAAAAAAGGATGAGTTAACTTTGGCCGTCGGAATGACTCTGATATTTACA GTCATAATGATGGTTTTCATGCCCTTGTTTGTCAAAGCTGTCAACATGAATGAATTAGTGGGAGGAGCCTGGTTAGGTGG CACCATTGATGCTACTGGCGCTGTTGTTGCAGCAGGCGAAGCATTGGGGGATGTGGCCGGAAAAGCGGCAGCTTTAGTAA AAATGATTCAAAATATGTTGATCGGAGCGATCGCTTTTGCCATAGCAATTTTTTGGGTTACATCTGTGGAAAAGCAACCA GGATCTTCTACTCCTACTTTAAATGAATTATGGGTGCGTTTTCCTAAGTTTGTTTTAGGTTTTATTGTAGCATCTTTATT AGTTTCTTTTGTATTTTTACCCGTTATAGGTTTGAATAATGTTCAAGCTTTATTGAAGCAGACTAAAAATTATCGTGGTT GGCTATTTTGTATGGCGTTTATCTCAATTGGGTTAGAGTCTAATTTTCAAATTTTAGCCCAACAAATGCGAGGCGGTAAA CCGATGATTTTGTATATTGTAGGGCAAAGTTTTAATATATTGCTAACTTTGGCTGTGGTGTGGTTAATGTTAAGTGGAAA CTTCTTTCCAGTTCCAGAATTAGGAGGGTAG
Upstream 100 bases:
>100_bases TTATTCAGCGATCGCCCATAGATAGATAAAAAAAATATAGAGAAAACCCCCGAACTTATCTCAATTGAAATAAAATAAAT ATTTATTTTCAATTAATTCT
Downstream 100 bases:
>100_bases ATAGTCCTACTCCCGTAATCGTTTTTGAATAAAACAGGGAGTAGAGTAATGGGATGATGGGGAATATTTTTCGCGGTTTG GGATCCTGTATATTGAGTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 436; Mature: 435
Protein sequence:
>436_residues MSKTKWSDLYKLEDWWAVWIGLLLLASVFSGWVTLVPKIPKWKGIDILAALPIDLIPSLVLLAIALCAVFTFGNILMQGR RANAMIPGFLAIFILATLAYVLGNSQAAKAINLGYAFWALLIGLLISNTVGTPEWLKPAVRTEYYIKTGLVILGAEILFS RIVEFGPYGLAIAWGVTPIVVIFMYLFGTRILKMQQKTLVMIVATSTSVCGVSAAIAAAAACRAKKDELTLAVGMTLIFT VIMMVFMPLFVKAVNMNELVGGAWLGGTIDATGAVVAAGEALGDVAGKAAALVKMIQNMLIGAIAFAIAIFWVTSVEKQP GSSTPTLNELWVRFPKFVLGFIVASLLVSFVFLPVIGLNNVQALLKQTKNYRGWLFCMAFISIGLESNFQILAQQMRGGK PMILYIVGQSFNILLTLAVVWLMLSGNFFPVPELGG
Sequences:
>Translated_436_residues MSKTKWSDLYKLEDWWAVWIGLLLLASVFSGWVTLVPKIPKWKGIDILAALPIDLIPSLVLLAIALCAVFTFGNILMQGR RANAMIPGFLAIFILATLAYVLGNSQAAKAINLGYAFWALLIGLLISNTVGTPEWLKPAVRTEYYIKTGLVILGAEILFS RIVEFGPYGLAIAWGVTPIVVIFMYLFGTRILKMQQKTLVMIVATSTSVCGVSAAIAAAAACRAKKDELTLAVGMTLIFT VIMMVFMPLFVKAVNMNELVGGAWLGGTIDATGAVVAAGEALGDVAGKAAALVKMIQNMLIGAIAFAIAIFWVTSVEKQP GSSTPTLNELWVRFPKFVLGFIVASLLVSFVFLPVIGLNNVQALLKQTKNYRGWLFCMAFISIGLESNFQILAQQMRGGK PMILYIVGQSFNILLTLAVVWLMLSGNFFPVPELGG >Mature_435_residues SKTKWSDLYKLEDWWAVWIGLLLLASVFSGWVTLVPKIPKWKGIDILAALPIDLIPSLVLLAIALCAVFTFGNILMQGRR ANAMIPGFLAIFILATLAYVLGNSQAAKAINLGYAFWALLIGLLISNTVGTPEWLKPAVRTEYYIKTGLVILGAEILFSR IVEFGPYGLAIAWGVTPIVVIFMYLFGTRILKMQQKTLVMIVATSTSVCGVSAAIAAAAACRAKKDELTLAVGMTLIFTV IMMVFMPLFVKAVNMNELVGGAWLGGTIDATGAVVAAGEALGDVAGKAAALVKMIQNMLIGAIAFAIAIFWVTSVEKQPG SSTPTLNELWVRFPKFVLGFIVASLLVSFVFLPVIGLNNVQALLKQTKNYRGWLFCMAFISIGLESNFQILAQQMRGGKP MILYIVGQSFNILLTLAVVWLMLSGNFFPVPELGG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0324 family [H]
Homologues:
Organism=Escherichia coli, GI1788482, Length=295, Percent_Identity=23.728813559322, Blast_Score=72, Evalue=8e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018383 [H]
Pfam domain/function: PF03601 Cons_hypoth698 [H]
EC number: NA
Molecular weight: Translated: 47156; Mature: 47025
Theoretical pI: Translated: 9.93; Mature: 9.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKTKWSDLYKLEDWWAVWIGLLLLASVFSGWVTLVPKIPKWKGIDILAALPIDLIPSLV CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHH LLAIALCAVFTFGNILMQGRRANAMIPGFLAIFILATLAYVLGNSQAAKAINLGYAFWAL HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH LIGLLISNTVGTPEWLKPAVRTEYYIKTGLVILGAEILFSRIVEFGPYGLAIAWGVTPIV HHHHHHHCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH VIFMYLFGTRILKMQQKTLVMIVATSTSVCGVSAAIAAAAACRAKKDELTLAVGMTLIFT HHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH VIMMVFMPLFVKAVNMNELVGGAWLGGTIDATGAVVAAGEALGDVAGKAAALVKMIQNML HHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHH IGAIAFAIAIFWVTSVEKQPGSSTPTLNELWVRFPKFVLGFIVASLLVSFVFLPVIGLNN HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH VQALLKQTKNYRGWLFCMAFISIGLESNFQILAQQMRGGKPMILYIVGQSFNILLTLAVV HHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHH WLMLSGNFFPVPELGG HHHHCCCCCCCCCCCC >Mature Secondary Structure SKTKWSDLYKLEDWWAVWIGLLLLASVFSGWVTLVPKIPKWKGIDILAALPIDLIPSLV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHH LLAIALCAVFTFGNILMQGRRANAMIPGFLAIFILATLAYVLGNSQAAKAINLGYAFWAL HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH LIGLLISNTVGTPEWLKPAVRTEYYIKTGLVILGAEILFSRIVEFGPYGLAIAWGVTPIV HHHHHHHCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH VIFMYLFGTRILKMQQKTLVMIVATSTSVCGVSAAIAAAAACRAKKDELTLAVGMTLIFT HHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH VIMMVFMPLFVKAVNMNELVGGAWLGGTIDATGAVVAAGEALGDVAGKAAALVKMIQNML HHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHH IGAIAFAIAIFWVTSVEKQPGSSTPTLNELWVRFPKFVLGFIVASLLVSFVFLPVIGLNN HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH VQALLKQTKNYRGWLFCMAFISIGLESNFQILAQQMRGGKPMILYIVGQSFNILLTLAVV HHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHH WLMLSGNFFPVPELGG HHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12835416 [H]