| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474199
Identifier: 113474199
GI number: 113474199
Start: 479268
End: 480356
Strand: Direct
Name: 113474199
Synonym: Tery_0310
Alternate gene names: NA
Gene position: 479268-480356 (Clockwise)
Preceding gene: 113474198
Following gene: 113474200
Centisome position: 6.18
GC content: 38.11
Gene sequence:
>1089_bases ATGACTATTAAACGTCAGTATAGTTTACCTAACTGCAAATTGATTTTGCAAGGCTGGAGTGATACTGGAGAAACTCTTAA TTTAAGTCCAGGGCAAGGGCAGGTATTATCTACATTAATGAGTGCTGAATGTCATCTTCATGGCCAAGAGTCACCATTGA CTGGAGGACGAGATTTTTTTGAAAGTTTGGTGAGAGAAGTTAGTAGCTATACTCAGGAATTTCTGAGTGGAATATCTAGC CCTAAACACCATAGTCAGAGTCCAGAGTTACTGCACTTACAAAAAATAGATGCCAATGTACACAGATTAACACTTTCTGA TAGCAATATTTCCCCTAAAAAACACCAACAACCAGAAAGAATTATTGACTTAACCACAGTTGAATTATTTGATCTTGTTG AGGCGATCGACCAATTTATAGCTGATACTCTAACTTTACCAGATTTTTCTTTGTCACTCATACCTGTTTCCCGAAAGCTG GCCAACTCAGGGGAACCTCTAGCTTCAAAGGTTATGCCTGCTGCTGTGGGAGTCTCCGGGCTAGCAATAGCAGCATTAGC TTTATTCTTTATACCTATTCCAGAAATACAACGTCCCAAAGATCCTCAACCAAAATCAAATGATAGCGAGAGCGTAGATA ATTTAGAGACATCCCCTACCGGTACCCCAGAACCGGGTTTTAATCAGACTCCCACCCCGAAAAGTCGGGAATATTCTCCC GAGTCAACTACTAATAATTCATATGAAAAGAAACTATCTGAAAAAAATTTAGAGTCATCTTTAACTACCAGTTCAGAAAT TACTGATGCAAAAGAGATTGAAAGATTACAGAATTTACTATCTAAAACAATTAATAATAATTGGAGAACAGAAATAAACA CAAATTTGATTTATCGTGTCAAGGTCGCTGCCGATGGTTCTATTATTGGGTACAAACCAATAAGTTCTACTGCGGCTGAT GAAGTGGATAAAGTTCCTCTGCCAGATCTATTAAACCAACAAGCACTAAGTCGAGATAATAATCAATCTACGACTGAGTT TAAGGTGTTGTTTACCAAACAAGGTTTCGTAGAAGTAGAACCCTGGTAA
Upstream 100 bases:
>100_bases AAAATTTCATCAGTATTGCCAATAGTTTTTGGATGAGGAAATTACAGATCAAATTGTCACAATATGACCTTTTGTAACAG TTTTATGGAGCAGAAATGCA
Downstream 100 bases:
>100_bases ATATAGCTGAAGTCAGATGTTAAACTAGCAGCATCAATTAAATTTGAGAGCTGTGAAAATGTCTGTCTTAGTAATGGCGA CTGATATATAGAAATCATTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 362; Mature: 361
Protein sequence:
>362_residues MTIKRQYSLPNCKLILQGWSDTGETLNLSPGQGQVLSTLMSAECHLHGQESPLTGGRDFFESLVREVSSYTQEFLSGISS PKHHSQSPELLHLQKIDANVHRLTLSDSNISPKKHQQPERIIDLTTVELFDLVEAIDQFIADTLTLPDFSLSLIPVSRKL ANSGEPLASKVMPAAVGVSGLAIAALALFFIPIPEIQRPKDPQPKSNDSESVDNLETSPTGTPEPGFNQTPTPKSREYSP ESTTNNSYEKKLSEKNLESSLTTSSEITDAKEIERLQNLLSKTINNNWRTEINTNLIYRVKVAADGSIIGYKPISSTAAD EVDKVPLPDLLNQQALSRDNNQSTTEFKVLFTKQGFVEVEPW
Sequences:
>Translated_362_residues MTIKRQYSLPNCKLILQGWSDTGETLNLSPGQGQVLSTLMSAECHLHGQESPLTGGRDFFESLVREVSSYTQEFLSGISS PKHHSQSPELLHLQKIDANVHRLTLSDSNISPKKHQQPERIIDLTTVELFDLVEAIDQFIADTLTLPDFSLSLIPVSRKL ANSGEPLASKVMPAAVGVSGLAIAALALFFIPIPEIQRPKDPQPKSNDSESVDNLETSPTGTPEPGFNQTPTPKSREYSP ESTTNNSYEKKLSEKNLESSLTTSSEITDAKEIERLQNLLSKTINNNWRTEINTNLIYRVKVAADGSIIGYKPISSTAAD EVDKVPLPDLLNQQALSRDNNQSTTEFKVLFTKQGFVEVEPW >Mature_361_residues TIKRQYSLPNCKLILQGWSDTGETLNLSPGQGQVLSTLMSAECHLHGQESPLTGGRDFFESLVREVSSYTQEFLSGISSP KHHSQSPELLHLQKIDANVHRLTLSDSNISPKKHQQPERIIDLTTVELFDLVEAIDQFIADTLTLPDFSLSLIPVSRKLA NSGEPLASKVMPAAVGVSGLAIAALALFFIPIPEIQRPKDPQPKSNDSESVDNLETSPTGTPEPGFNQTPTPKSREYSPE STTNNSYEKKLSEKNLESSLTTSSEITDAKEIERLQNLLSKTINNNWRTEINTNLIYRVKVAADGSIIGYKPISSTAADE VDKVPLPDLLNQQALSRDNNQSTTEFKVLFTKQGFVEVEPW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39970; Mature: 39839
Theoretical pI: Translated: 4.85; Mature: 4.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIKRQYSLPNCKLILQGWSDTGETLNLSPGQGQVLSTLMSAECHLHGQESPLTGGRDFF CCCCCCCCCCCCEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHH ESLVREVSSYTQEFLSGISSPKHHSQSPELLHLQKIDANVHRLTLSDSNISPKKHQQPER HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCHHHCCHHH IIDLTTVELFDLVEAIDQFIADTLTLPDFSLSLIPVSRKLANSGEPLASKVMPAAVGVSG HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHCCCCCHHHHHHHHHHHCHHH LAIAALALFFIPIPEIQRPKDPQPKSNDSESVDNLETSPTGTPEPGFNQTPTPKSREYSP HHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC ESTTNNSYEKKLSEKNLESSLTTSSEITDAKEIERLQNLLSKTINNNWRTEINTNLIYRV CCCCCCHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHCCCCCEEECCCEEEEE KVAADGSIIGYKPISSTAADEVDKVPLPDLLNQQALSRDNNQSTTEFKVLFTKQGFVEVE EEECCCCEEECCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEECCEEEEC PW CC >Mature Secondary Structure TIKRQYSLPNCKLILQGWSDTGETLNLSPGQGQVLSTLMSAECHLHGQESPLTGGRDFF CCCCCCCCCCCEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHH ESLVREVSSYTQEFLSGISSPKHHSQSPELLHLQKIDANVHRLTLSDSNISPKKHQQPER HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCHHHCCHHH IIDLTTVELFDLVEAIDQFIADTLTLPDFSLSLIPVSRKLANSGEPLASKVMPAAVGVSG HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHCCCCCHHHHHHHHHHHCHHH LAIAALALFFIPIPEIQRPKDPQPKSNDSESVDNLETSPTGTPEPGFNQTPTPKSREYSP HHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC ESTTNNSYEKKLSEKNLESSLTTSSEITDAKEIERLQNLLSKTINNNWRTEINTNLIYRV CCCCCCHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHCCCCCEEECCCEEEEE KVAADGSIIGYKPISSTAADEVDKVPLPDLLNQQALSRDNNQSTTEFKVLFTKQGFVEVE EEECCCCEEECCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEECCEEEEC PW CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA