| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474092
Identifier: 113474092
GI number: 113474092
Start: 284158
End: 284673
Strand: Direct
Name: 113474092
Synonym: Tery_0189
Alternate gene names: NA
Gene position: 284158-284673 (Clockwise)
Preceding gene: 113474091
Following gene: 113474094
Centisome position: 3.67
GC content: 31.78
Gene sequence:
>516_bases ATGAGAAAACAGCACTCTACAATGAATATAAATAAATACAAAAAAACGATATTATTTTTAGGAGTATTGTTTTCATCAGC AGGAATGCAGAAAATCACCCCAGTTTTATCCCAAAATTTACAATTGACACCTATATTTGAAGATGTTAACTTGTATCCAA AGTCTACTCTAAACCGAATGATTATCAGAGGGTTAAGTGGAGGACCTATATCTGCAAAAGAAAAAACAGGTAGAGAAAAT ACTGTAACAGGACCATGTGTAGGTTTTATTGATAGAGAACCAGATCATAGATTAGTTTTAAATGGCTTTTTTAAATCTCT GAAACTTGAGGTTCAAAGTAGTGAAGATACAACTTTAGTTATTAGAGGTCCTGGAGGTAGTTGGTGTAATGATGACTTCG AGGGAAAAAATCCAGGAATTACAGGTCAATGGTTTTCAGGTACTTATGACATTTGGATAGGTTCTTACCAAAGAAATAAA TACTATCCTTATGTAATTAAAATTACTAAAGAATAA
Upstream 100 bases:
>100_bases TTGATGTACTAAAAAAAAGAAAGGGAAAATTAAAAATATTCAAGTGAAACAGCAAAATATGTGATTTATATTTTCCCCTA TAACTTTTTTAACATTTTTT
Downstream 100 bases:
>100_bases AGATAAGTAATAATCTTAAGTTAATTTAATTAAGTTTTTTTGTATGAATTATAAGTATTTATAGAAAATTTATTTGTATA TATCGTACCATTCTTTTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 171; Mature: 171
Protein sequence:
>171_residues MRKQHSTMNINKYKKTILFLGVLFSSAGMQKITPVLSQNLQLTPIFEDVNLYPKSTLNRMIIRGLSGGPISAKEKTGREN TVTGPCVGFIDREPDHRLVLNGFFKSLKLEVQSSEDTTLVIRGPGGSWCNDDFEGKNPGITGQWFSGTYDIWIGSYQRNK YYPYVIKITKE
Sequences:
>Translated_171_residues MRKQHSTMNINKYKKTILFLGVLFSSAGMQKITPVLSQNLQLTPIFEDVNLYPKSTLNRMIIRGLSGGPISAKEKTGREN TVTGPCVGFIDREPDHRLVLNGFFKSLKLEVQSSEDTTLVIRGPGGSWCNDDFEGKNPGITGQWFSGTYDIWIGSYQRNK YYPYVIKITKE >Mature_171_residues MRKQHSTMNINKYKKTILFLGVLFSSAGMQKITPVLSQNLQLTPIFEDVNLYPKSTLNRMIIRGLSGGPISAKEKTGREN TVTGPCVGFIDREPDHRLVLNGFFKSLKLEVQSSEDTTLVIRGPGGSWCNDDFEGKNPGITGQWFSGTYDIWIGSYQRNK YYPYVIKITKE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19315; Mature: 19315
Theoretical pI: Translated: 9.88; Mature: 9.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKQHSTMNINKYKKTILFLGVLFSSAGMQKITPVLSQNLQLTPIFEDVNLYPKSTLNRM CCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHH IIRGLSGGPISAKEKTGRENTVTGPCVGFIDREPDHRLVLNGFFKSLKLEVQSSEDTTLV HHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEHHHHEEEEEEECCCCCEEE IRGPGGSWCNDDFEGKNPGITGQWFSGTYDIWIGSYQRNKYYPYVIKITKE EECCCCCCCCCCCCCCCCCCCCEECCCEEEEEEEEEECCCCCEEEEEEECC >Mature Secondary Structure MRKQHSTMNINKYKKTILFLGVLFSSAGMQKITPVLSQNLQLTPIFEDVNLYPKSTLNRM CCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHH IIRGLSGGPISAKEKTGRENTVTGPCVGFIDREPDHRLVLNGFFKSLKLEVQSSEDTTLV HHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEHHHHEEEEEEECCCCCEEE IRGPGGSWCNDDFEGKNPGITGQWFSGTYDIWIGSYQRNKYYPYVIKITKE EECCCCCCCCCCCCCCCCCCCCEECCCEEEEEEEEEECCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA