| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110835486
Identifier: 110835486
GI number: 110835486
Start: 2971107
End: 2972201
Strand: Reverse
Name: 110835486
Synonym: ABO_2625
Alternate gene names: NA
Gene position: 2972201-2971107 (Counterclockwise)
Preceding gene: 110835487
Following gene: 110835485
Centisome position: 95.26
GC content: 59.0
Gene sequence:
>1095_bases ATGCGGAGATATTGGGTGGTTTCTATTCATACCTCAGCCCCTGCGTTGTCTCTTCGCGCGGGGAGCGCTGCCATTGCGCA TTTGCGCGAACATGGACTGCGGGCCGCCGATGTGGATATCGTTCCCGGCGCTGCCGGCGGGCCAAAAGCGTTAGGCATCA ACGGCCTAGACCAAGCGGTGTTCGGGGATTTTTTGCCCACCGCGCCGCGCCCGCGGACCTTGATTGGCGCGTCTATCGGC AGCTGGCGGTTTGCGGCCATTACCATGGGCGATGCCCGCGAAGGCCTGGCCCGTTTGGCTGCGCTCTATACTCAGCAGCG TTTTCCTAAAGGCATCACCGCCAAAGAGATAAGCCTGCGCTGCGCGCAGATGTTGTCGGAACTGCTGCAGGATCGGGATC AGCGGATTCTGCATAATCCGGATTACCGGCTGGTGATTGTGATGACCCGCAGCCGTGGGTTGATGGCCCGTCAGGGGGGG CTAGGGTTGGGGCTAGGGCTGGCAGGCTTGATTGGCACCAATTTGTTTAGCCGCCGAGCTATCGGCTGGTTTATGGAGCG TGCGCTGGTTTATCCGCAAGGGGATGCTTTGCCGTTGGGGGAGCTCAATGATTTCACCACCCACCATGTGAATCTGCGGG CGGATAATGTGCGGGCGGCATTGTTGGCCAGTGCCGCGATTCCCATGGTGCTGGACGGCGTCACCGGCTTGCCCGGTGCT CCAGATGGCGTGTATCGCGATGGCGGCCTGGTCGATTATCACCTAGACCTGCCTTATCAGAGCGAAGGTATTGTGTTGTT CCCGCATTTCACTGATCGGGTAATCCCCGGTTGGTTTGATAAACCGTTGCGGTGGCGCAACGGCGACCCGCAACGCTTGC GCAACCTGTTGCTAGTCACCCCGTCCCGCGACTATTTGGCACGCCTGCCCCACGGCAAGCTTCCCGATCGTACGGATTTC AAACAGTATCGTGGTAATGACGCTGGTCGCGAGGCTTATTGGCGCAAGGCGGTGGCTGAAAGTCAGCATCTTGGCGATGA GTTTCTGGAGTTGGTTGAAACCGGCAAACTAGTTGATCGTTTGCACCCTCTGTAA
Upstream 100 bases:
>100_bases TCTTCAGCGGCAGGATTGCCGTACGGTTTTGCTCCAATAGTGGAATGCTATTTCGGCGCGTTTCTTTTTCTCGTTACCAT AGTTACTCCTGCTGGAATAG
Downstream 100 bases:
>100_bases GCGCAGCCACTGGGCAGGGTGGCGTTTGACGGACAGTTCCTCGTAGCCGTGTTAGGCTCGCTCTCCTGATTCAGCTAGAG GGACCATGATGACATCTACT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 364; Mature: 364
Protein sequence:
>364_residues MRRYWVVSIHTSAPALSLRAGSAAIAHLREHGLRAADVDIVPGAAGGPKALGINGLDQAVFGDFLPTAPRPRTLIGASIG SWRFAAITMGDAREGLARLAALYTQQRFPKGITAKEISLRCAQMLSELLQDRDQRILHNPDYRLVIVMTRSRGLMARQGG LGLGLGLAGLIGTNLFSRRAIGWFMERALVYPQGDALPLGELNDFTTHHVNLRADNVRAALLASAAIPMVLDGVTGLPGA PDGVYRDGGLVDYHLDLPYQSEGIVLFPHFTDRVIPGWFDKPLRWRNGDPQRLRNLLLVTPSRDYLARLPHGKLPDRTDF KQYRGNDAGREAYWRKAVAESQHLGDEFLELVETGKLVDRLHPL
Sequences:
>Translated_364_residues MRRYWVVSIHTSAPALSLRAGSAAIAHLREHGLRAADVDIVPGAAGGPKALGINGLDQAVFGDFLPTAPRPRTLIGASIG SWRFAAITMGDAREGLARLAALYTQQRFPKGITAKEISLRCAQMLSELLQDRDQRILHNPDYRLVIVMTRSRGLMARQGG LGLGLGLAGLIGTNLFSRRAIGWFMERALVYPQGDALPLGELNDFTTHHVNLRADNVRAALLASAAIPMVLDGVTGLPGA PDGVYRDGGLVDYHLDLPYQSEGIVLFPHFTDRVIPGWFDKPLRWRNGDPQRLRNLLLVTPSRDYLARLPHGKLPDRTDF KQYRGNDAGREAYWRKAVAESQHLGDEFLELVETGKLVDRLHPL >Mature_364_residues MRRYWVVSIHTSAPALSLRAGSAAIAHLREHGLRAADVDIVPGAAGGPKALGINGLDQAVFGDFLPTAPRPRTLIGASIG SWRFAAITMGDAREGLARLAALYTQQRFPKGITAKEISLRCAQMLSELLQDRDQRILHNPDYRLVIVMTRSRGLMARQGG LGLGLGLAGLIGTNLFSRRAIGWFMERALVYPQGDALPLGELNDFTTHHVNLRADNVRAALLASAAIPMVLDGVTGLPGA PDGVYRDGGLVDYHLDLPYQSEGIVLFPHFTDRVIPGWFDKPLRWRNGDPQRLRNLLLVTPSRDYLARLPHGKLPDRTDF KQYRGNDAGREAYWRKAVAESQHLGDEFLELVETGKLVDRLHPL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40080; Mature: 40080
Theoretical pI: Translated: 9.93; Mature: 9.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRYWVVSIHTSAPALSLRAGSAAIAHLREHGLRAADVDIVPGAAGGPKALGINGLDQAV CCEEEEEEEECCCCEEEECCCHHHHHHHHHCCCCEECEEEECCCCCCCCCCCCCCCHHHH FGDFLPTAPRPRTLIGASIGSWRFAAITMGDAREGLARLAALYTQQRFPKGITAKEISLR HHHHCCCCCCCCEEEECCCCCEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHH CAQMLSELLQDRDQRILHNPDYRLVIVMTRSRGLMARQGGLGLGLGLAGLIGTNLFSRRA HHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEECCCCEEHHHHHHHHHHHHHHHHH IGWFMERALVYPQGDALPLGELNDFTTHHVNLRADNVRAALLASAAIPMVLDGVTGLPGA HHHHHHHHEECCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCC PDGVYRDGGLVDYHLDLPYQSEGIVLFPHFTDRVIPGWFDKPLRWRNGDPQRLRNLLLVT CCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEC PSRDYLARLPHGKLPDRTDFKQYRGNDAGREAYWRKAVAESQHLGDEFLELVETGKLVDR CCHHHHHHCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH LHPL HCCC >Mature Secondary Structure MRRYWVVSIHTSAPALSLRAGSAAIAHLREHGLRAADVDIVPGAAGGPKALGINGLDQAV CCEEEEEEEECCCCEEEECCCHHHHHHHHHCCCCEECEEEECCCCCCCCCCCCCCCHHHH FGDFLPTAPRPRTLIGASIGSWRFAAITMGDAREGLARLAALYTQQRFPKGITAKEISLR HHHHCCCCCCCCEEEECCCCCEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHH CAQMLSELLQDRDQRILHNPDYRLVIVMTRSRGLMARQGGLGLGLGLAGLIGTNLFSRRA HHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEECCCCEEHHHHHHHHHHHHHHHHH IGWFMERALVYPQGDALPLGELNDFTTHHVNLRADNVRAALLASAAIPMVLDGVTGLPGA HHHHHHHHEECCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCC PDGVYRDGGLVDYHLDLPYQSEGIVLFPHFTDRVIPGWFDKPLRWRNGDPQRLRNLLLVT CCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEC PSRDYLARLPHGKLPDRTDFKQYRGNDAGREAYWRKAVAESQHLGDEFLELVETGKLVDR CCHHHHHHCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH LHPL HCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA