| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is phoR [H]
Identifier: 110835402
GI number: 110835402
Start: 2880586
End: 2883180
Strand: Reverse
Name: phoR [H]
Synonym: ABO_2541
Alternate gene names: 110835402
Gene position: 2883180-2880586 (Counterclockwise)
Preceding gene: 110835403
Following gene: 110835401
Centisome position: 92.41
GC content: 56.15
Gene sequence:
>2595_bases ATGCGCAATCGTCTGAGCCCGGATCAACGCCGTTATTTGGCAGAGCATGTATCTGTGCTTTGCTTGGTCGTAGGCTTGTG TGCGTTGTTGACCATCAGCGGTGCGCTGTCCTTTGTGGATCGGTATATCTACGACAACCTGCTGCAAGCCCTCCCTGACG ACCCCTCCCAGGATGTGGTGATCGTTGGGATCGATGAATACAGCTTGCGCGAAATTGGGCGTTGGCCCTGGGATCGGGAA GTCCACGCCCAACTGATCGAGCGTCTTACGGAAATGGGTGCCCGTGCTGTGCTCATGGATCTGATTCTGTCTGAGCCTGA CCGTAACAACCCGGGTTCTGATGTGGCCTTGGTGCAGGCCATGGAAGCCAACGAGCATGTGTACCTGCCCGTGCATGTGG AGCAATTGCGGGCAGGGGGGCAGTTGATTGAAGTATTGCCTTATTCACCGTTTGCTCGTGCTGCAGCCGGGTTGGGGCAT GTGGATTTGGAGCTGGATGCCGACGGTGTGGCTCGGTCGGTCTATATGCGCTCGGGGGTGGGGCAGGCTTGGTGGCCACA CATTACCCACACGTTGCTCGTGCAAGAAGGGATTTTGTCTGAACAGGTGTTTCCCGCCGATAAGGGCGAAGAGTTTTCTG GGCTGGCTAATGTCCGTCGATATCACCGTTACATCCCTTTTGTCAGCGGCCCTAATAGTTATCCGCAAGTTTCTGCCGTC GAGCTACTCAATAACCGAATACCCGAACAATTGATTCGCGACAAAATTGTGCTCATCGGCGCTACTGCTGCCGGCTTGGG TGACATGCTGCCCACCCCTATGGCGGATCAGGGGGAGTTAATGGCCGGTGTCGAGATCAATGCAAATCTGCTGGATGCCT TGCGCGCCGATCGTCTCATCCGCGATTTAGCCATGCCCAGTGCGTTGGTGCTTGGGGTAGTGCTGGCTCTGTTGGCGCCC TTGCTGATGCCTTATGTGTTGCCACGCTGGAGCATGCCGCTGGTTTTTTCGGTGCTGTTGCTGTGTTTGCTGGTTAGCAT GGCCTCGTTGATTTCTTTGCGCTTGTGGTTTGCGCCTAGTGCGGCCATGGCATCGGCCATCATGGCCTATCCATTATGGA CTTGGCGGAGGCTGGAGTACTCGCTGTCCTATATGCGTAATGCCCTAGAGCGGTTGTCGGAATACAGCGATTTGAACCAA CGGCTGACGCAGCCCTCCTCATTGGCACAAATGAGCCGTATGTTGGACCAGGTGCTGCCGGTGCGCTCCTGGCGCTTATT AGGTGGAGAGAAGCCGTTGCGGGGCGGCGACAGCCTGCCGGCGGCCACATGGAAAGGTGAGTTGGCGCGCCAATACCGGT TCCGCCATGATGGCCGGCGCTATGAGCTGGATCTGGTTTGGGAACAGGCATTACACGCGGATACCTATGATTACTGGGTG CGGGCCATGTTGGTTCGTACCCGTACGCGGGCTCCCAATGTGGGGCCACGTTACGAAGTATTGGAAAAGCATATTGAACG GTTGCGTCGTGAAGAAGAGCGGCAAGAGGCGCTGACGCGTTTCTTTCAGGTGACCTTGGCGCAAATTCGAGAAGGCGTGG TAATTGCTGATGCCTGTGGGGTGATTGTCTATGCCAACCCGCAGGCGGCTTTTTTACTGGGGCTGGAAGTGGGCGCGCTG GATTCCGGGCAGCCTATGGTCACGGAACTGAACAGGGAGTTGGAACTGCGCGAGCACTGCTGGGACGATCTGCTATGCCA GACCCTCAGTGAGGGGCGGACCCAGATTGAATGCCGCAACCGGCAGGGTACGGATCTGTACTTGGATATGCTGCTAGTGC ATGCAGGTGATAATCCGGGGCGGATGATGATTATCTCCTTCAAGGATATTAGCGATGTGAAGCTGGCCATGCGGGCCCGC TCAGAAATGCTGGATTTCCTCTCTCACGATTTGCGTTCGCCCATGGTGTCGGTGTTGGCGTTAACGGAGAAAATGCGTCA TTCCGGAGCAGAGCGGGATTTGCCGGTGTTCTTAGATAATGTTGAGCACTATGCCCGGCGTAACCTAAATATTGCTGAGC AATTCCTGCAGCTTGCGCGGGTGGAAGCGGTGGATTCCGTGGAAATGAACGAGCAAGACATGCTTGATGTGGTAGAAAGT GCGATTGATCAGGTGCACATTCAGGCCCAGCAGCGTGATATCGTCCTGCGTTTTGAATACGACCCGGATCAGGAAGTGTG GGTGCTGGGTAATAACGAGCTGCTGGAGCGCTTGGTCGTGAACTTGCTGACCAATGCGGTGAAATACAGCCATGAAGGTA GCTCGGTAGATGTGACCTTGTATGTCGATGGTGAGCGGGTTGCCTGTGACGTGCGTGACCGTGGTGTGGGAATTCCGCCT GAGTTCCAGGAACGACTGTTCGATCGCTTTAGCCGGGCCAGTACCAGCGGAGGCGCCCGAACCCGTGGCGCGGGCATGGG TCTGCGTTTCGTCAAAGTGGTTGCTGAGCGCCATGGCGGGGAGATTCGAGTTCACAGTGTGGTTAACGAAGGAAGCCGCT TCACCCTGTTTTTACCGCGTGTTGAGCTGACCTGA
Upstream 100 bases:
>100_bases GCCGCCAATAGAGCCCGAACCTGTTCCAGAGGAAGAAGATGCGCATTGGGATGTTTGGGTGTTCATGGGTGCGGCCGCTC TACTCTTGGCGCTATAACTT
Downstream 100 bases:
>100_bases TACTCCCCGAATCGCTGCGTTGCGGTGGCTCGACGGGTGATCTTTCTGTTGTCATAGAGGCTCGGGCGGAGCCTTATCGA GCGCTTTACTGAACAGCCGC
Product: sensory box histidine kinase PhoR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 864; Mature: 864
Protein sequence:
>864_residues MRNRLSPDQRRYLAEHVSVLCLVVGLCALLTISGALSFVDRYIYDNLLQALPDDPSQDVVIVGIDEYSLREIGRWPWDRE VHAQLIERLTEMGARAVLMDLILSEPDRNNPGSDVALVQAMEANEHVYLPVHVEQLRAGGQLIEVLPYSPFARAAAGLGH VDLELDADGVARSVYMRSGVGQAWWPHITHTLLVQEGILSEQVFPADKGEEFSGLANVRRYHRYIPFVSGPNSYPQVSAV ELLNNRIPEQLIRDKIVLIGATAAGLGDMLPTPMADQGELMAGVEINANLLDALRADRLIRDLAMPSALVLGVVLALLAP LLMPYVLPRWSMPLVFSVLLLCLLVSMASLISLRLWFAPSAAMASAIMAYPLWTWRRLEYSLSYMRNALERLSEYSDLNQ RLTQPSSLAQMSRMLDQVLPVRSWRLLGGEKPLRGGDSLPAATWKGELARQYRFRHDGRRYELDLVWEQALHADTYDYWV RAMLVRTRTRAPNVGPRYEVLEKHIERLRREEERQEALTRFFQVTLAQIREGVVIADACGVIVYANPQAAFLLGLEVGAL DSGQPMVTELNRELELREHCWDDLLCQTLSEGRTQIECRNRQGTDLYLDMLLVHAGDNPGRMMIISFKDISDVKLAMRAR SEMLDFLSHDLRSPMVSVLALTEKMRHSGAERDLPVFLDNVEHYARRNLNIAEQFLQLARVEAVDSVEMNEQDMLDVVES AIDQVHIQAQQRDIVLRFEYDPDQEVWVLGNNELLERLVVNLLTNAVKYSHEGSSVDVTLYVDGERVACDVRDRGVGIPP EFQERLFDRFSRASTSGGARTRGAGMGLRFVKVVAERHGGEIRVHSVVNEGSRFTLFLPRVELT
Sequences:
>Translated_864_residues MRNRLSPDQRRYLAEHVSVLCLVVGLCALLTISGALSFVDRYIYDNLLQALPDDPSQDVVIVGIDEYSLREIGRWPWDRE VHAQLIERLTEMGARAVLMDLILSEPDRNNPGSDVALVQAMEANEHVYLPVHVEQLRAGGQLIEVLPYSPFARAAAGLGH VDLELDADGVARSVYMRSGVGQAWWPHITHTLLVQEGILSEQVFPADKGEEFSGLANVRRYHRYIPFVSGPNSYPQVSAV ELLNNRIPEQLIRDKIVLIGATAAGLGDMLPTPMADQGELMAGVEINANLLDALRADRLIRDLAMPSALVLGVVLALLAP LLMPYVLPRWSMPLVFSVLLLCLLVSMASLISLRLWFAPSAAMASAIMAYPLWTWRRLEYSLSYMRNALERLSEYSDLNQ RLTQPSSLAQMSRMLDQVLPVRSWRLLGGEKPLRGGDSLPAATWKGELARQYRFRHDGRRYELDLVWEQALHADTYDYWV RAMLVRTRTRAPNVGPRYEVLEKHIERLRREEERQEALTRFFQVTLAQIREGVVIADACGVIVYANPQAAFLLGLEVGAL DSGQPMVTELNRELELREHCWDDLLCQTLSEGRTQIECRNRQGTDLYLDMLLVHAGDNPGRMMIISFKDISDVKLAMRAR SEMLDFLSHDLRSPMVSVLALTEKMRHSGAERDLPVFLDNVEHYARRNLNIAEQFLQLARVEAVDSVEMNEQDMLDVVES AIDQVHIQAQQRDIVLRFEYDPDQEVWVLGNNELLERLVVNLLTNAVKYSHEGSSVDVTLYVDGERVACDVRDRGVGIPP EFQERLFDRFSRASTSGGARTRGAGMGLRFVKVVAERHGGEIRVHSVVNEGSRFTLFLPRVELT >Mature_864_residues MRNRLSPDQRRYLAEHVSVLCLVVGLCALLTISGALSFVDRYIYDNLLQALPDDPSQDVVIVGIDEYSLREIGRWPWDRE VHAQLIERLTEMGARAVLMDLILSEPDRNNPGSDVALVQAMEANEHVYLPVHVEQLRAGGQLIEVLPYSPFARAAAGLGH VDLELDADGVARSVYMRSGVGQAWWPHITHTLLVQEGILSEQVFPADKGEEFSGLANVRRYHRYIPFVSGPNSYPQVSAV ELLNNRIPEQLIRDKIVLIGATAAGLGDMLPTPMADQGELMAGVEINANLLDALRADRLIRDLAMPSALVLGVVLALLAP LLMPYVLPRWSMPLVFSVLLLCLLVSMASLISLRLWFAPSAAMASAIMAYPLWTWRRLEYSLSYMRNALERLSEYSDLNQ RLTQPSSLAQMSRMLDQVLPVRSWRLLGGEKPLRGGDSLPAATWKGELARQYRFRHDGRRYELDLVWEQALHADTYDYWV RAMLVRTRTRAPNVGPRYEVLEKHIERLRREEERQEALTRFFQVTLAQIREGVVIADACGVIVYANPQAAFLLGLEVGAL DSGQPMVTELNRELELREHCWDDLLCQTLSEGRTQIECRNRQGTDLYLDMLLVHAGDNPGRMMIISFKDISDVKLAMRAR SEMLDFLSHDLRSPMVSVLALTEKMRHSGAERDLPVFLDNVEHYARRNLNIAEQFLQLARVEAVDSVEMNEQDMLDVVES AIDQVHIQAQQRDIVLRFEYDPDQEVWVLGNNELLERLVVNLLTNAVKYSHEGSSVDVTLYVDGERVACDVRDRGVGIPP EFQERLFDRFSRASTSGGARTRGAGMGLRFVKVVAERHGGEIRVHSVVNEGSRFTLFLPRVELT
Specific function: Probably forms part of a two-component regulatory system senX3/regX3. Phosphorylates regX3 (Probable) [H]
COG id: COG4252
COG function: function code T; Predicted transmembrane sensor domain
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI1786600, Length=370, Percent_Identity=26.4864864864865, Blast_Score=102, Evalue=7e-23, Organism=Escherichia coli, GI1789149, Length=231, Percent_Identity=29.4372294372294, Blast_Score=93, Evalue=9e-20, Organism=Escherichia coli, GI1786912, Length=223, Percent_Identity=26.457399103139, Blast_Score=86, Evalue=9e-18, Organism=Escherichia coli, GI1790861, Length=214, Percent_Identity=28.9719626168224, Blast_Score=85, Evalue=2e-17, Organism=Escherichia coli, GI1786783, Length=344, Percent_Identity=25.8720930232558, Blast_Score=85, Evalue=2e-17, Organism=Escherichia coli, GI145693157, Length=232, Percent_Identity=27.1551724137931, Blast_Score=84, Evalue=6e-17, Organism=Escherichia coli, GI48994928, Length=228, Percent_Identity=26.3157894736842, Blast_Score=82, Evalue=1e-16, Organism=Escherichia coli, GI1788279, Length=232, Percent_Identity=27.5862068965517, Blast_Score=82, Evalue=2e-16, Organism=Escherichia coli, GI1790346, Length=232, Percent_Identity=25, Blast_Score=80, Evalue=7e-16, Organism=Escherichia coli, GI1787894, Length=237, Percent_Identity=27.0042194092827, Blast_Score=79, Evalue=2e-15, Organism=Escherichia coli, GI1788713, Length=237, Percent_Identity=24.8945147679325, Blast_Score=75, Evalue=2e-14, Organism=Escherichia coli, GI87081816, Length=236, Percent_Identity=26.6949152542373, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1789403, Length=194, Percent_Identity=32.9896907216495, Blast_Score=72, Evalue=2e-13, Organism=Escherichia coli, GI1788549, Length=353, Percent_Identity=22.6628895184136, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI87082128, Length=232, Percent_Identity=26.7241379310345, Blast_Score=67, Evalue=4e-12, Organism=Escherichia coli, GI1790436, Length=216, Percent_Identity=25.9259259259259, Blast_Score=67, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 97555; Mature: 97555
Theoretical pI: Translated: 5.21; Mature: 5.21
Prosite motif: PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNRLSPDQRRYLAEHVSVLCLVVGLCALLTISGALSFVDRYIYDNLLQALPDDPSQDVV CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE IVGIDEYSLREIGRWPWDREVHAQLIERLTEMGARAVLMDLILSEPDRNNPGSDVALVQA EEECCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHEE MEANEHVYLPVHVEQLRAGGQLIEVLPYSPFARAAAGLGHVDLELDADGVARSVYMRSGV ECCCCEEEEEEEHHHHHCCCCEEEECCCCCHHHHHCCCCCEEEEECCCHHHHHHHHHCCC GQAWWPHITHTLLVQEGILSEQVFPADKGEEFSGLANVRRYHRYIPFVSGPNSYPQVSAV CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHH ELLNNRIPEQLIRDKIVLIGATAAGLGDMLPTPMADQGELMAGVEINANLLDALRADRLI HHHHHCCHHHHHHCCEEEEEECHHCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHH RDLAMPSALVLGVVLALLAPLLMPYVLPRWSMPLVFSVLLLCLLVSMASLISLRLWFAPS HHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCH AAMASAIMAYPLWTWRRLEYSLSYMRNALERLSEYSDLNQRLTQPSSLAQMSRMLDQVLP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC VRSWRLLGGEKPLRGGDSLPAATWKGELARQYRFRHDGRRYELDLVWEQALHADTYDYWV HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCHHHHHH RAMLVRTRTRAPNVGPRYEVLEKHIERLRREEERQEALTRFFQVTLAQIREGVVIADACG HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCC VIVYANPQAAFLLGLEVGALDSGQPMVTELNRELELREHCWDDLLCQTLSEGRTQIECRN EEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC RQGTDLYLDMLLVHAGDNPGRMMIISFKDISDVKLAMRARSEMLDFLSHDLRSPMVSVLA CCCCHHEEEHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTEKMRHSGAERDLPVFLDNVEHYARRNLNIAEQFLQLARVEAVDSVEMNEQDMLDVVES HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH AIDQVHIQAQQRDIVLRFEYDPDQEVWVLGNNELLERLVVNLLTNAVKYSHEGSSVDVTL HHHHHHHEECCCCEEEEEECCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEE YVDGERVACDVRDRGVGIPPEFQERLFDRFSRASTSGGARTRGAGMGLRFVKVVAERHGG EECCCEEEEEHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCC EIRVHSVVNEGSRFTLFLPRVELT EEEEEEECCCCCEEEEEECCEECC >Mature Secondary Structure MRNRLSPDQRRYLAEHVSVLCLVVGLCALLTISGALSFVDRYIYDNLLQALPDDPSQDVV CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE IVGIDEYSLREIGRWPWDREVHAQLIERLTEMGARAVLMDLILSEPDRNNPGSDVALVQA EEECCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHEE MEANEHVYLPVHVEQLRAGGQLIEVLPYSPFARAAAGLGHVDLELDADGVARSVYMRSGV ECCCCEEEEEEEHHHHHCCCCEEEECCCCCHHHHHCCCCCEEEEECCCHHHHHHHHHCCC GQAWWPHITHTLLVQEGILSEQVFPADKGEEFSGLANVRRYHRYIPFVSGPNSYPQVSAV CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHH ELLNNRIPEQLIRDKIVLIGATAAGLGDMLPTPMADQGELMAGVEINANLLDALRADRLI HHHHHCCHHHHHHCCEEEEEECHHCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHH RDLAMPSALVLGVVLALLAPLLMPYVLPRWSMPLVFSVLLLCLLVSMASLISLRLWFAPS HHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCH AAMASAIMAYPLWTWRRLEYSLSYMRNALERLSEYSDLNQRLTQPSSLAQMSRMLDQVLP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC VRSWRLLGGEKPLRGGDSLPAATWKGELARQYRFRHDGRRYELDLVWEQALHADTYDYWV HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCHHHHHH RAMLVRTRTRAPNVGPRYEVLEKHIERLRREEERQEALTRFFQVTLAQIREGVVIADACG HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCC VIVYANPQAAFLLGLEVGALDSGQPMVTELNRELELREHCWDDLLCQTLSEGRTQIECRN EEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC RQGTDLYLDMLLVHAGDNPGRMMIISFKDISDVKLAMRARSEMLDFLSHDLRSPMVSVLA CCCCHHEEEHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTEKMRHSGAERDLPVFLDNVEHYARRNLNIAEQFLQLARVEAVDSVEMNEQDMLDVVES HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH AIDQVHIQAQQRDIVLRFEYDPDQEVWVLGNNELLERLVVNLLTNAVKYSHEGSSVDVTL HHHHHHHEECCCCEEEEEECCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEE YVDGERVACDVRDRGVGIPPEFQERLFDRFSRASTSGGARTRGAGMGLRFVKVVAERHGG EECCCEEEEEHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCC EIRVHSVVNEGSRFTLFLPRVELT EEEEEEECCCCCEEEEEECCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9426136; 12788972 [H]