Click here to switch to the map view.

The map label for this gene is yfcd [C]

Identifier: 110835396

GI number: 110835396

Start: 2874238

End: 2874828

Strand: Reverse

Name: yfcd [C]

Synonym: ABO_2535

Alternate gene names: 110835396

Gene position: 2874828-2874238 (Counterclockwise)

Preceding gene: 110835397

Following gene: 110835395

Centisome position: 92.14

GC content: 59.39

Gene sequence:

>591_bases
ATGATGGGGGCAGTCCAGTGTTGTTGCGTACAGCGTTCCTCATCTGGCAATCCCCGCGCCATAACGCTAGTGTTCCCGTC
CTTGTCAGCAAGAAAACAACCCATGAGTCATCACGAACCCGTTCTGCTGGTTTCCCGGCATAACCACCCCCGCGGCAGTT
GTCAGCGTGGGCGCATGCAGCGTCAGAGGTTGATTCATCGTGCGTCCTATGTGGTGGTGACAGATCTAGCAGGAAGGGTA
TGCGTGCAGAAACGGGCAGCAGACAAGCACTTCTATCCCGGTGGCTGGGATTTGGCCGCCGGTGGGGTAATGCGCCCGGA
TGAAAGCGTGGCTCAAGGGTTGTCGCGAGAGTTGCACGAAGAGTTGGGTCTGCAGCGCCAGTTTTCTTGCTGGCAATGGT
TCTGGTTTGCCAATCCTCATCACCGCGTCTGGGGCGCCCTGTCATCAACGGTAGCCTGCCCTGAGGCGGTGTCCCTCAGT
GACGAAGTGGTCGCCGTACAGTGGCTGCCAGCCTGTGAAGCGCTGGCGTTGCCCGGTGCCACTCCGGATACTCGCCACGC
GCTGTCCTTGCTGTTGTCATCGTCCTCCTGA

Upstream 100 bases:

>100_bases
GATCTTTAGCAACAATACGAAGGGGGTGGTGAGTCATGCTCGGCCCATGCCCGCCCCACGCCATCATCGTTTGTGATATG
CCGTGGGCACGGCGTTCCAA

Downstream 100 bases:

>100_bases
GCGTTTTCGTCCTTGTGGCCGGGTGTCTGGCTGGATAGGTTTTTGTATCAACAGGGGGAGCTTTATGACTCAGCGATTCA
GTGTGCGCGGTAAACGTATT

Product: putative Nudix hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MMGAVQCCCVQRSSSGNPRAITLVFPSLSARKQPMSHHEPVLLVSRHNHPRGSCQRGRMQRQRLIHRASYVVVTDLAGRV
CVQKRAADKHFYPGGWDLAAGGVMRPDESVAQGLSRELHEELGLQRQFSCWQWFWFANPHHRVWGALSSTVACPEAVSLS
DEVVAVQWLPACEALALPGATPDTRHALSLLLSSSS

Sequences:

>Translated_196_residues
MMGAVQCCCVQRSSSGNPRAITLVFPSLSARKQPMSHHEPVLLVSRHNHPRGSCQRGRMQRQRLIHRASYVVVTDLAGRV
CVQKRAADKHFYPGGWDLAAGGVMRPDESVAQGLSRELHEELGLQRQFSCWQWFWFANPHHRVWGALSSTVACPEAVSLS
DEVVAVQWLPACEALALPGATPDTRHALSLLLSSSS
>Mature_196_residues
MMGAVQCCCVQRSSSGNPRAITLVFPSLSARKQPMSHHEPVLLVSRHNHPRGSCQRGRMQRQRLIHRASYVVVTDLAGRV
CVQKRAADKHFYPGGWDLAAGGVMRPDESVAQGLSRELHEELGLQRQFSCWQWFWFANPHHRVWGALSSTVACPEAVSLS
DEVVAVQWLPACEALALPGATPDTRHALSLLLSSSS

Specific function: Unknown

COG id: COG0494

COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

Organism=Escherichia coli, GI1788637, Length=164, Percent_Identity=37.1951219512195, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000086
- InterPro:   IPR015797 [H]

Pfam domain/function: PF00293 NUDIX [H]

EC number: 3.6.-.- [C]

Molecular weight: Translated: 21630; Mature: 21630

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: PS00893 NUDIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMGAVQCCCVQRSSSGNPRAITLVFPSLSARKQPMSHHEPVLLVSRHNHPRGSCQRGRMQ
CCCCHHHHEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHH
RQRLIHRASYVVVTDLAGRVCVQKRAADKHFYPGGWDLAAGGVMRPDESVAQGLSRELHE
HHHHHHHHCEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
ELGLQRQFSCWQWFWFANPHHRVWGALSSTVACPEAVSLSDEVVAVQWLPACEALALPGA
HHCCCHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHCCCCC
TPDTRHALSLLLSSSS
CCCHHHHHHHHHCCCC
>Mature Secondary Structure
MMGAVQCCCVQRSSSGNPRAITLVFPSLSARKQPMSHHEPVLLVSRHNHPRGSCQRGRMQ
CCCCHHHHEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHH
RQRLIHRASYVVVTDLAGRVCVQKRAADKHFYPGGWDLAAGGVMRPDESVAQGLSRELHE
HHHHHHHHCEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
ELGLQRQFSCWQWFWFANPHHRVWGALSSTVACPEAVSLSDEVVAVQWLPACEALALPGA
HHCCCHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHCCCCC
TPDTRHALSLLLSSSS
CCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]