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The map label for this gene is ycfS [H]

Identifier: 110636362

GI number: 110636362

Start: 4346649

End: 4347269

Strand: Reverse

Name: ycfS [H]

Synonym: Meso_4038

Alternate gene names: 110636362

Gene position: 4347269-4346649 (Counterclockwise)

Preceding gene: 110636365

Following gene: 110636356

Centisome position: 98.52

GC content: 61.03

Gene sequence:

>621_bases
ATGAAATCGAAAGCTGTTCTTCTTGCCGCCGTGCTGGGACTTGCGGCGGTACTGGCCGGTTGCAGCGTTGACGGTACTCA
GCGCATCTTTACCTCCGAATATGGATCGGTGAAAGACGCCGGCTATCAGTTGCCAAAGATCCCGGTTTCCCGCGTGCCGC
GCCAATATCACCGGCAGATCATCAGCTACCAGACCGATGAAAAGCCCGGCACGGTTGTCGTCGATACCAAAGACAAGTTC
CTTTACCTCGTGATGGAAGGCGGCAAGGCGATGCGCTACGGCATCGGCGTGGGCCGCGAGGGCTTCTCCTGGTCCGGTAC
GGCGCGCGTGGCACTGAAGCGCGAATGGCCCACCTGGACGCCTCCGGCGGCGATGATCAAGCGCCAGCCTGAATTGGCGA
AGTGGGCCGGCGGCATGCCGCCCGGATTGTCCAACCCGCTCGGCGCACGAGCCCTCTACCTCTTCAACAAGAACGGCGAT
ACCGGCTACCGGCTGCACGGCACACCAGAATGGTGGTCGATCGGGCAGGCGATGTCCTCGGGCTGCATCCGCCTTCTGAA
CCAGGACATCATCGACCTCTATAACCGCGTGGAGGTCGGCGCAAAGGTGATCGTGAAATAA

Upstream 100 bases:

>100_bases
GACGCTTAGAAAATCTTGGCGGCTCGTTAACCTTGATTTTAAGAATAGCGGCGAAAATCAGGTATTGTTAACACCTGGGT
AACGGGGATCGGATTTTTTC

Downstream 100 bases:

>100_bases
GCGCCGCGCTGCGCTTTACTCCAAAGAAAAACCGGGCCTGCATGGCCCGGTTTTTTTTCTTGGGAAGGATCTTGCCTGCT
TAAGCGACCTGCTCGACCTG

Product: ErfK/YbiS/YcfS/YnhG

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MKSKAVLLAAVLGLAAVLAGCSVDGTQRIFTSEYGSVKDAGYQLPKIPVSRVPRQYHRQIISYQTDEKPGTVVVDTKDKF
LYLVMEGGKAMRYGIGVGREGFSWSGTARVALKREWPTWTPPAAMIKRQPELAKWAGGMPPGLSNPLGARALYLFNKNGD
TGYRLHGTPEWWSIGQAMSSGCIRLLNQDIIDLYNRVEVGAKVIVK

Sequences:

>Translated_206_residues
MKSKAVLLAAVLGLAAVLAGCSVDGTQRIFTSEYGSVKDAGYQLPKIPVSRVPRQYHRQIISYQTDEKPGTVVVDTKDKF
LYLVMEGGKAMRYGIGVGREGFSWSGTARVALKREWPTWTPPAAMIKRQPELAKWAGGMPPGLSNPLGARALYLFNKNGD
TGYRLHGTPEWWSIGQAMSSGCIRLLNQDIIDLYNRVEVGAKVIVK
>Mature_206_residues
MKSKAVLLAAVLGLAAVLAGCSVDGTQRIFTSEYGSVKDAGYQLPKIPVSRVPRQYHRQIISYQTDEKPGTVVVDTKDKF
LYLVMEGGKAMRYGIGVGREGFSWSGTARVALKREWPTWTPPAAMIKRQPELAKWAGGMPPGLSNPLGARALYLFNKNGD
TGYRLHGTPEWWSIGQAMSSGCIRLLNQDIIDLYNRVEVGAKVIVK

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787356, Length=160, Percent_Identity=35, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787968, Length=137, Percent_Identity=37.2262773722628, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787040, Length=138, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788299, Length=156, Percent_Identity=33.3333333333333, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 22615; Mature: 22615

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSKAVLLAAVLGLAAVLAGCSVDGTQRIFTSEYGSVKDAGYQLPKIPVSRVPRQYHRQI
CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHCCHHHHHHH
ISYQTDEKPGTVVVDTKDKFLYLVMEGGKAMRYGIGVGREGFSWSGTARVALKREWPTWT
HCCCCCCCCCEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCC
PPAAMIKRQPELAKWAGGMPPGLSNPLGARALYLFNKNGDTGYRLHGTPEWWSIGQAMSS
CCHHHHHCCCCHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCEEECCCCCHHHHHHHHHH
GCIRLLNQDIIDLYNRVEVGAKVIVK
HHHHHHHHHHHHHHHHHHHCEEEECC
>Mature Secondary Structure
MKSKAVLLAAVLGLAAVLAGCSVDGTQRIFTSEYGSVKDAGYQLPKIPVSRVPRQYHRQI
CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHCCHHHHHHH
ISYQTDEKPGTVVVDTKDKFLYLVMEGGKAMRYGIGVGREGFSWSGTARVALKREWPTWT
HCCCCCCCCCEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCC
PPAAMIKRQPELAKWAGGMPPGLSNPLGARALYLFNKNGDTGYRLHGTPEWWSIGQAMSS
CCHHHHHCCCCHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCEEECCCCCHHHHHHHHHH
GCIRLLNQDIIDLYNRVEVGAKVIVK
HHHHHHHHHHHHHHHHHHHCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]