| Definition | Mesorhizobium sp. BNC1, complete genome. |
|---|---|
| Accession | NC_008254 |
| Length | 4,412,446 |
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The map label for this gene is iolC [H]
Identifier: 110636028
GI number: 110636028
Start: 3995925
End: 3997817
Strand: Reverse
Name: iolC [H]
Synonym: Meso_3703
Alternate gene names: 110636028
Gene position: 3997817-3995925 (Counterclockwise)
Preceding gene: 110636035
Following gene: 110636027
Centisome position: 90.6
GC content: 59.43
Gene sequence:
>1893_bases GTGCAATTCGACGTTGCTGCATTAGGCCGGATCGCAGTCGATCTTTATGGCGAACAAAAGGGCACATCCCTGGAGGACAC CGCGACATTCCGACGCTACGTCGGCGGCTCAAGCGGAAACTTGGCGATTGGCTGCGCAAGGCTCGGTCTGAAGACGGCGA TGATTTCGAGTACCGGAGAAGACCCGATGGGACGGTATATCCGCGCCGAACTCGCCAAAGCAGGCGTTGATAATACCTGC GTTACGGCAAATCCCCAGCGACGAACCGCCCTCGCGTTCCTTGGAATGCAGCGTGCCGATGCGATCGCGCTCGATTTCTA CCGTGACCGCGCCGCGGACATGGCGGTTGGTTTCGGTGACCGTGAAGCGGAAAAGGTCCGCCAATCCAGATTACTGGCGC TGACCGGCACGCACATGTCGGAACCGGGTACCGCCGACGCCCTGCGCAAAGCCGTCGAGACCGCCCGCGAGGCCGCAGGC AAGGTCGTTCTGGACATCGACTTCCGCAAGGCCCTGTGGGAGCAGTCGCCGGGCGGCATTGAGGGTGTCGTCAGTTCAAT CAATGATCTGCTGGACAAGATCAATATCGTCGTCGGCAACGAGGAGGAGTTCCTGAGGCTCGGTGGAAGCAACGATATTG TCGAGGCTTTGAAGAAGGTCCGCGGCAACACGTCGGCTCTTCTCGTTTTGAAGCTCGGCGCCGAGGGCTCCATCGCGTTT GCCGGTGAGATACCGCCTCGGTCCGAATGGAGACCTGTCCCGGGCTTCAAAGTCTACGTCCTAAATGTCGTCGGCGCGGG CGACGCTTTCCTCGCGGGGTTCCTTTCGCTTTGGCTGCAAGGCGAGCCTGTCAACGCATGTTTGCGCAGAGGTAACCTGA ATGGTGCGCTCGTTGTGTCGCGTCATGCATGCTCTGACGCCATGCCATTCCTGGCAGAGATCGAAACAATTGAAGATGAA TCAGCGGTGGATCTGATAGCGAAGGGCAGCGAGCTGGAACGGCTGCATGCGGTGCTGAAACGGCCTCGTGTTGAAAGAGG CCTCACCGCGCTTGCTTTCGACCATCGCGTCCCCTTCGCCCAGCTGATAGCCGAAACCGGGCGCTCTAAGGCTGACGCCA TCGCTTTCAAGAAATTGATCGCCCGCGCCGCAAAGGAAGTTGCCGGAGAACGCGGTCTTGCCAATCCCGGCGTCCTGATC GATCAGCATTACGGCACCGATGTGATGGAGGCCTTGACCGAAGACGGCTGGTGGGTCGGCCGCCCGGTGGAAGAAACGGG CTCTCGTCCGCTGCGTTTTGAAGCCGAAGATTCGCTTGAGGAAACCATCTCCGCGTGGAACCCGAAGCACGTCGCCAAGG TGCTGGTCTGGTATCATCCAGGCGATGACATCGCACTCAAGAACGAGCAACAGGCGAGCCTCAAAAGGCTGCAAGCCTGC TGCCGCGGCCGTGGACAGGAGTGGATGCTGGAGGTCATTCTCCCGCTGGACCTTGAGCGGTCCGACGCGCTGCTCATTGC TGCGGTCGGCGAGCTCTACGCTGCCGGCCTCAAGCCCGATTGGCTGAAGCTTTCCGGCTTCGAAACAGCAGACGCATGGG ATCAGCTCGAGAGTATGGTCAAGAGCTTCGATCCCTACTGCCGTGGAGTTATTCTGCTGGGCCTCAGCCAGCCGATCGAA GATTTGCGCATACCTATCGAGCTTGCCGCACAGCAGCCGTTCTGCCAAGGATTCGCTGTTGGACGGTCGATCTTCATGGA CCCCGCAAGGAAATGGTTCGCCGGTATCTCGACGGACGAAGAAACCGTCAATGAGATCAAGGGGAACTACGCGAAGGTGG TGGATATGTGGAGCTCTACAAAGCAAAGCACGTCGATAGCCGAGGTGGCTTGA
Upstream 100 bases:
>100_bases AGACATTTTTTTCTATTGTTGCAAGATCAATTCGTTGACTGAATGAAAATAACATTCTAGCAAAAAACGAATGGACGCGC ATGTTCGGAGGAGAGTTGTC
Downstream 100 bases:
>100_bases TGGCCGCCGAAAACAAATCCATCGACGCGATTCTGGATCCGGTGATAGAGCCGCCGACATCGGCCGACGGCCTCATTAAT CTCATCCGGCTTCGCCGCAT
Product: PfkB
Products: NA
Alternate protein names: 2-deoxy-5-keto-D-gluconate kinase; DKG kinase [H]
Number of amino acids: Translated: 630; Mature: 630
Protein sequence:
>630_residues MQFDVAALGRIAVDLYGEQKGTSLEDTATFRRYVGGSSGNLAIGCARLGLKTAMISSTGEDPMGRYIRAELAKAGVDNTC VTANPQRRTALAFLGMQRADAIALDFYRDRAADMAVGFGDREAEKVRQSRLLALTGTHMSEPGTADALRKAVETAREAAG KVVLDIDFRKALWEQSPGGIEGVVSSINDLLDKINIVVGNEEEFLRLGGSNDIVEALKKVRGNTSALLVLKLGAEGSIAF AGEIPPRSEWRPVPGFKVYVLNVVGAGDAFLAGFLSLWLQGEPVNACLRRGNLNGALVVSRHACSDAMPFLAEIETIEDE SAVDLIAKGSELERLHAVLKRPRVERGLTALAFDHRVPFAQLIAETGRSKADAIAFKKLIARAAKEVAGERGLANPGVLI DQHYGTDVMEALTEDGWWVGRPVEETGSRPLRFEAEDSLEETISAWNPKHVAKVLVWYHPGDDIALKNEQQASLKRLQAC CRGRGQEWMLEVILPLDLERSDALLIAAVGELYAAGLKPDWLKLSGFETADAWDQLESMVKSFDPYCRGVILLGLSQPIE DLRIPIELAAQQPFCQGFAVGRSIFMDPARKWFAGISTDEETVNEIKGNYAKVVDMWSSTKQSTSIAEVA
Sequences:
>Translated_630_residues MQFDVAALGRIAVDLYGEQKGTSLEDTATFRRYVGGSSGNLAIGCARLGLKTAMISSTGEDPMGRYIRAELAKAGVDNTC VTANPQRRTALAFLGMQRADAIALDFYRDRAADMAVGFGDREAEKVRQSRLLALTGTHMSEPGTADALRKAVETAREAAG KVVLDIDFRKALWEQSPGGIEGVVSSINDLLDKINIVVGNEEEFLRLGGSNDIVEALKKVRGNTSALLVLKLGAEGSIAF AGEIPPRSEWRPVPGFKVYVLNVVGAGDAFLAGFLSLWLQGEPVNACLRRGNLNGALVVSRHACSDAMPFLAEIETIEDE SAVDLIAKGSELERLHAVLKRPRVERGLTALAFDHRVPFAQLIAETGRSKADAIAFKKLIARAAKEVAGERGLANPGVLI DQHYGTDVMEALTEDGWWVGRPVEETGSRPLRFEAEDSLEETISAWNPKHVAKVLVWYHPGDDIALKNEQQASLKRLQAC CRGRGQEWMLEVILPLDLERSDALLIAAVGELYAAGLKPDWLKLSGFETADAWDQLESMVKSFDPYCRGVILLGLSQPIE DLRIPIELAAQQPFCQGFAVGRSIFMDPARKWFAGISTDEETVNEIKGNYAKVVDMWSSTKQSTSIAEVA >Mature_630_residues MQFDVAALGRIAVDLYGEQKGTSLEDTATFRRYVGGSSGNLAIGCARLGLKTAMISSTGEDPMGRYIRAELAKAGVDNTC VTANPQRRTALAFLGMQRADAIALDFYRDRAADMAVGFGDREAEKVRQSRLLALTGTHMSEPGTADALRKAVETAREAAG KVVLDIDFRKALWEQSPGGIEGVVSSINDLLDKINIVVGNEEEFLRLGGSNDIVEALKKVRGNTSALLVLKLGAEGSIAF AGEIPPRSEWRPVPGFKVYVLNVVGAGDAFLAGFLSLWLQGEPVNACLRRGNLNGALVVSRHACSDAMPFLAEIETIEDE SAVDLIAKGSELERLHAVLKRPRVERGLTALAFDHRVPFAQLIAETGRSKADAIAFKKLIARAAKEVAGERGLANPGVLI DQHYGTDVMEALTEDGWWVGRPVEETGSRPLRFEAEDSLEETISAWNPKHVAKVLVWYHPGDDIALKNEQQASLKRLQAC CRGRGQEWMLEVILPLDLERSDALLIAAVGELYAAGLKPDWLKLSGFETADAWDQLESMVKSFDPYCRGVILLGLSQPIE DLRIPIELAAQQPFCQGFAVGRSIFMDPARKWFAGISTDEETVNEIKGNYAKVVDMWSSTKQSTSIAEVA
Specific function: Catalyzes the phosphorylation of 5-dehydro-2-deoxy-D- gluconate (2-deoxy-5-keto-D-gluconate or DKG) to 6-phospho-5- dehydro-2-deoxy-D-gluconate (DKGP) [H]
COG id: COG0524
COG function: function code G; Sugar kinases, ribokinase family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the carbohydrate kinase pfkB family [H]
Homologues:
Organism=Caenorhabditis elegans, GI17532905, Length=293, Percent_Identity=26.6211604095563, Blast_Score=65, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011611 - InterPro: IPR002173 - InterPro: IPR022841 [H]
Pfam domain/function: PF00294 PfkB [H]
EC number: =2.7.1.92 [H]
Molecular weight: Translated: 68527; Mature: 68527
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: PS00584 PFKB_KINASES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQFDVAALGRIAVDLYGEQKGTSLEDTATFRRYVGGSSGNLAIGCARLGLKTAMISSTGE CCCCHHHHHHHHEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHCCCCC DPMGRYIRAELAKAGVDNTCVTANPQRRTALAFLGMQRADAIALDFYRDRAADMAVGFGD CHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHEECCCC REAEKVRQSRLLALTGTHMSEPGTADALRKAVETAREAAGKVVLDIDFRKALWEQSPGGI HHHHHHHHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHCCCCCCH EGVVSSINDLLDKINIVVGNEEEFLRLGGSNDIVEALKKVRGNTSALLVLKLGAEGSIAF HHHHHHHHHHHHHCEEEECCCHHHEEECCCHHHHHHHHHHCCCCEEEEEEEECCCCCEEE AGEIPPRSEWRPVPGFKVYVLNVVGAGDAFLAGFLSLWLQGEPVNACLRRGNLNGALVVS ECCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCCHHHHHHCCCCCCEEEEE RHACSDAMPFLAEIETIEDESAVDLIAKGSELERLHAVLKRPRVERGLTALAFDHRVPFA EHHCCCCCHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHCCCHHHCCEEEEECCCCCHH QLIAETGRSKADAIAFKKLIARAAKEVAGERGLANPGVLIDQHYGTDVMEALTEDGWWVG HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHCCCCEEC RPVEETGSRPLRFEAEDSLEETISAWNPKHVAKVLVWYHPGDDIALKNEQQASLKRLQAC CCHHHHCCCCEEECCHHHHHHHHHCCCHHHEEEEEEEEECCCCCEECCCHHHHHHHHHHH CRGRGQEWMLEVILPLDLERSDALLIAAVGELYAAGLKPDWLKLSGFETADAWDQLESMV HCCCCHHEEEHEEECCCCCCCCCEEEEEHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHH KSFDPYCRGVILLGLSQPIEDLRIPIELAAQQPFCQGFAVGRSIFMDPARKWFAGISTDE HHHCHHHHHEEEEECCCCHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCH ETVNEIKGNYAKVVDMWSSTKQSTSIAEVA HHHHHHCCCHHHHHHHHHCCCCCCCHHHCC >Mature Secondary Structure MQFDVAALGRIAVDLYGEQKGTSLEDTATFRRYVGGSSGNLAIGCARLGLKTAMISSTGE CCCCHHHHHHHHEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHCCCCC DPMGRYIRAELAKAGVDNTCVTANPQRRTALAFLGMQRADAIALDFYRDRAADMAVGFGD CHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHEECCCC REAEKVRQSRLLALTGTHMSEPGTADALRKAVETAREAAGKVVLDIDFRKALWEQSPGGI HHHHHHHHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHCCCCCCH EGVVSSINDLLDKINIVVGNEEEFLRLGGSNDIVEALKKVRGNTSALLVLKLGAEGSIAF HHHHHHHHHHHHHCEEEECCCHHHEEECCCHHHHHHHHHHCCCCEEEEEEEECCCCCEEE AGEIPPRSEWRPVPGFKVYVLNVVGAGDAFLAGFLSLWLQGEPVNACLRRGNLNGALVVS ECCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCCHHHHHHCCCCCCEEEEE RHACSDAMPFLAEIETIEDESAVDLIAKGSELERLHAVLKRPRVERGLTALAFDHRVPFA EHHCCCCCHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHCCCHHHCCEEEEECCCCCHH QLIAETGRSKADAIAFKKLIARAAKEVAGERGLANPGVLIDQHYGTDVMEALTEDGWWVG HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHCCCCEEC RPVEETGSRPLRFEAEDSLEETISAWNPKHVAKVLVWYHPGDDIALKNEQQASLKRLQAC CCHHHHCCCCEEECCHHHHHHHHHCCCHHHEEEEEEEEECCCCCEECCCHHHHHHHHHHH CRGRGQEWMLEVILPLDLERSDALLIAAVGELYAAGLKPDWLKLSGFETADAWDQLESMV HCCCCHHEEEHEEECCCCCCCCCEEEEEHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHH KSFDPYCRGVILLGLSQPIEDLRIPIELAAQQPFCQGFAVGRSIFMDPARKWFAGISTDE HHHCHHHHHEEEEECCCCHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCH ETVNEIKGNYAKVVDMWSSTKQSTSIAEVA HHHHHHCCCHHHHHHHHHCCCCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA