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The map label for this gene is 110633042

Identifier: 110633042

GI number: 110633042

Start: 762303

End: 763535

Strand: Direct

Name: 110633042

Synonym: Meso_0685

Alternate gene names: NA

Gene position: 762303-763535 (Clockwise)

Preceding gene: 110633041

Following gene: 110633043

Centisome position: 17.28

GC content: 59.12

Gene sequence:

>1233_bases
ATGTATTATCAGCTTTACGAGCTTCATCACGCCGCGCTGCAGCCCGCACGCACCTATGCCGATGCGATCAGGCTCTTTTA
TTCCAATCCGCTGAATCCTGTCTCCAGCACCACATGGGGCCGGTCGATCGCCGCCGCCGCGGAGATGTTCGAGCGCACCA
CACGCCGTTATGGCAAGCCCGGATTCGGAATCACCTCCACGGTGGTGGATGGAAAGGAAGTTCGTGTGCAGGAGAAGGAG
GTGTGGTCGAGGCCCTTTTGCCGTCTCCTACATTTCGAACGGCAACTGCCGGCCAGGCGAAAGCCGGATGTGAAGCTTCT
GATGGTCGCGCCCATGTCGGGCCATTATGCGACATTGCTGCGCGGCACGGTGGAAGCCATGCTGCCGCACGCCGATGTCT
ATATCACCGACTGGATCGATGCCCGCATGGTGCCGCTTTCCTACGGTAATTTCGATCTCGACGATTATATCGACTACCTG
ATCGAAATGTTTCACCTGCTGGGGCCAGATGCGAGCGTGATGGCGGTTTGTCAGCCTTCCGTGCCGGTCCTTGCAGCCGT
GGCGCTGATGGAGGCGCGTGGCGACCCCAATCTGCCGTCCTCCATGACGCTGATGGGCGGCCCCATCGATACCCGCAGGA
ACCCCACCGCCGTCAACCGCCTCGCGCAGGAGCACGGCATTGAGTGGTTTCGCGATAACGTCGTCATGTCGGTGCCGTGG
CCCAATCCCGGCTTCATGCGCCCGGTCTATCCGGGTTTTCTTCAGCTCTCGGGCTTCATGAGCATGAATCTCGACCGCCA
CATCGTCGCGCATGAGGAGTTCTTCATGCATCTGGTGAAGGGAGATGGCGACTCCGCGGAGAAACACCGGGAATTTTACG
ACGAGTATCTGGCGGTGATGGATTTGACGGCGGAATTCTACCTGCAGACCGTCGACACCGTCTTCATCCGCCACGCGCTT
CCCAAAGGAGAGATGACGCATCGCTCCGAACGAGTTGATCCCGCTTCCATACGATCCGTGGCCTTGCTCACCGTCGAGGG
GGAGAATGATGACATTTCCGGGATCGGCCAGACCAAGGCCGCCCATGATCTCTGTGTCAACATTCCGTCAGGCAAGCGGC
ATCATCACCTCCAGCCTTCCGTCGGGCATTATGGCGTCTTCAATGGCTCGCGGTTTCGCAAGGAGATCCTTCCGCGCATC
GTGCGGTTCGTGAATGAAAACCGTGGCGCATAA

Upstream 100 bases:

>100_bases
GGCGGTGCGCACAAACACGACTCTATTGCGTTGCACCTAAATCGCGTACGCTGCCCAAAGCGCCCGCTGCCCGCCTGAGC
ATTCGCCGGAAAGGTCTGCG

Downstream 100 bases:

>100_bases
GCGACACCGCTGTTGAAAACCCGCTCCATAAGCGCGCGCCTTGGTAACCATAACGGGAAAACGAGTCATTTCTAATTGAC
AGCCCCCCCTTAAAGTTCCT

Product: polyhydroxyalkanoate depolymerase, intracellular

Products: NA

Alternate protein names: Intracellular PHB Depolymerase; Polyhydroxyalkanoate Depolymerase; Poly-Beta-Hydroxyalkanoate Depolymerase; PHB Depolymerase; PHB De-Polymerase Domain-Containing Protein; Poly[D(-)-3-Hydroxybutyrate] Depolymerase; Intracellular Poly(3-Hydroxybutyrate) Depolymerase; Intracellular Polyhydroxyalkanoate Depolymerase; Polyhydroxyalkanoate Depolymerase Intracellular Subfamily; Poly(3-Hydroxyalkanoate) Depolymerase; Poly(3-Hydroxybutyrate) Depolymerase; Poly(3-Hydroxyalkanoate)Synthetase; Alpha/Beta Hydrolase Fold; Alpha/Beta Hydrolase Fold Protein; Intracellular PHB Depolymerase Protein; Poly-Beta-Hydroxyalkanoate Depolymerase-Like Protein; PHB De-Polymerase Domain Protein; PHB De-Polymerase; Intracellular Poly[D(-)-3-Hydroxybutyrate] Depolymerase; Poly[D(-)-3-Hydroxybutyrate](Phb) Depolymerase; Poly-Beta-Hydroxyalkanoate/Butyrate Depolymerase; Poly-Beta-Hydroxyalkanoate Depolymerase Protein; Poly[D(-)-3-Hydroxyalkanoate] Depolymerase; Polyhydroxybutanoate Depolymerase; Poly-Beta-Hydroxybutyrate Depolymerase

Number of amino acids: Translated: 410; Mature: 410

Protein sequence:

>410_residues
MYYQLYELHHAALQPARTYADAIRLFYSNPLNPVSSTTWGRSIAAAAEMFERTTRRYGKPGFGITSTVVDGKEVRVQEKE
VWSRPFCRLLHFERQLPARRKPDVKLLMVAPMSGHYATLLRGTVEAMLPHADVYITDWIDARMVPLSYGNFDLDDYIDYL
IEMFHLLGPDASVMAVCQPSVPVLAAVALMEARGDPNLPSSMTLMGGPIDTRRNPTAVNRLAQEHGIEWFRDNVVMSVPW
PNPGFMRPVYPGFLQLSGFMSMNLDRHIVAHEEFFMHLVKGDGDSAEKHREFYDEYLAVMDLTAEFYLQTVDTVFIRHAL
PKGEMTHRSERVDPASIRSVALLTVEGENDDISGIGQTKAAHDLCVNIPSGKRHHHLQPSVGHYGVFNGSRFRKEILPRI
VRFVNENRGA

Sequences:

>Translated_410_residues
MYYQLYELHHAALQPARTYADAIRLFYSNPLNPVSSTTWGRSIAAAAEMFERTTRRYGKPGFGITSTVVDGKEVRVQEKE
VWSRPFCRLLHFERQLPARRKPDVKLLMVAPMSGHYATLLRGTVEAMLPHADVYITDWIDARMVPLSYGNFDLDDYIDYL
IEMFHLLGPDASVMAVCQPSVPVLAAVALMEARGDPNLPSSMTLMGGPIDTRRNPTAVNRLAQEHGIEWFRDNVVMSVPW
PNPGFMRPVYPGFLQLSGFMSMNLDRHIVAHEEFFMHLVKGDGDSAEKHREFYDEYLAVMDLTAEFYLQTVDTVFIRHAL
PKGEMTHRSERVDPASIRSVALLTVEGENDDISGIGQTKAAHDLCVNIPSGKRHHHLQPSVGHYGVFNGSRFRKEILPRI
VRFVNENRGA
>Mature_410_residues
MYYQLYELHHAALQPARTYADAIRLFYSNPLNPVSSTTWGRSIAAAAEMFERTTRRYGKPGFGITSTVVDGKEVRVQEKE
VWSRPFCRLLHFERQLPARRKPDVKLLMVAPMSGHYATLLRGTVEAMLPHADVYITDWIDARMVPLSYGNFDLDDYIDYL
IEMFHLLGPDASVMAVCQPSVPVLAAVALMEARGDPNLPSSMTLMGGPIDTRRNPTAVNRLAQEHGIEWFRDNVVMSVPW
PNPGFMRPVYPGFLQLSGFMSMNLDRHIVAHEEFFMHLVKGDGDSAEKHREFYDEYLAVMDLTAEFYLQTVDTVFIRHAL
PKGEMTHRSERVDPASIRSVALLTVEGENDDISGIGQTKAAHDLCVNIPSGKRHHHLQPSVGHYGVFNGSRFRKEILPRI
VRFVNENRGA

Specific function: Unknown

COG id: COG4553

COG function: function code I; Poly-beta-hydroxyalkanoate depolymerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46444; Mature: 46444

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYYQLYELHHAALQPARTYADAIRLFYSNPLNPVSSTTWGRSIAAAAEMFERTTRRYGKP
CCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
GFGITSTVVDGKEVRVQEKEVWSRPFCRLLHFERQLPARRKPDVKLLMVAPMSGHYATLL
CCCCCCEEECCHHHEEEHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHH
RGTVEAMLPHADVYITDWIDARMVPLSYGNFDLDDYIDYLIEMFHLLGPDASVMAVCQPS
HHHHHHHCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCC
VPVLAAVALMEARGDPNLPSSMTLMGGPIDTRRNPTAVNRLAQEHGIEWFRDNVVMSVPW
HHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCEECCCEEEECCC
PNPGFMRPVYPGFLQLSGFMSMNLDRHIVAHEEFFMHLVKGDGDSAEKHREFYDEYLAVM
CCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
DLTAEFYLQTVDTVFIRHALPKGEMTHRSERVDPASIRSVALLTVEGENDDISGIGQTKA
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHCCEEEEEEEECCCCCCCCCCCCCC
AHDLCVNIPSGKRHHHLQPSVGHYGVFNGSRFRKEILPRIVRFVNENRGA
CCHHEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MYYQLYELHHAALQPARTYADAIRLFYSNPLNPVSSTTWGRSIAAAAEMFERTTRRYGKP
CCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
GFGITSTVVDGKEVRVQEKEVWSRPFCRLLHFERQLPARRKPDVKLLMVAPMSGHYATLL
CCCCCCEEECCHHHEEEHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHH
RGTVEAMLPHADVYITDWIDARMVPLSYGNFDLDDYIDYLIEMFHLLGPDASVMAVCQPS
HHHHHHHCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCC
VPVLAAVALMEARGDPNLPSSMTLMGGPIDTRRNPTAVNRLAQEHGIEWFRDNVVMSVPW
HHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCEECCCEEEECCC
PNPGFMRPVYPGFLQLSGFMSMNLDRHIVAHEEFFMHLVKGDGDSAEKHREFYDEYLAVM
CCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
DLTAEFYLQTVDTVFIRHALPKGEMTHRSERVDPASIRSVALLTVEGENDDISGIGQTKA
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHCCEEEEEEEECCCCCCCCCCCCCC
AHDLCVNIPSGKRHHHLQPSVGHYGVFNGSRFRKEILPRIVRFVNENRGA
CCHHEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA