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The map label for this gene is soxD [H]

Identifier: 110632949

GI number: 110632949

Start: 662518

End: 662820

Strand: Direct

Name: soxD [H]

Synonym: Meso_0592

Alternate gene names: 110632949

Gene position: 662518-662820 (Clockwise)

Preceding gene: 110632948

Following gene: 110632950

Centisome position: 15.01

GC content: 60.4

Gene sequence:

>303_bases
ATGCTGCTCATTCACTGCCCCTATTGCGACGAGACCCTGCCCGAGCTGGAATTCACCTATGCCGGTGAGGCCCACATTGC
CCGGCCCGCAAATCCTTCCGAAGCGAGCGACGAGGACTGGGAGAAGTTCCTGTTCATCCGCACCAATGCGCGAGGCCCTC
ATTTCGAGCGCTGGCGGCATATCCACGGATGCGGCCGCTTCTTCAACGCGCTGCGTGACACCGTAAGCGACAAGTTCCTG
GCCACATACAGGGCCGGCGCGCCTAGGCCTGATCTGGACTCTGTAAAAAAGGCCGCAGAATGA

Upstream 100 bases:

>100_bases
GAGCCGCACCCGGTCAACGCGCCGTTCACGCTCGAACGCTTCCGCGCCGGTCGCCTCATCGATGAAGCCGCTGCGGCGGC
CGTTGCCCATTGAGGACACC

Downstream 100 bases:

>100_bases
ATAGCTTGCGCGTTCCCGGCCGTGGCCGCGTAGACCATTCCCAGCCGGTGAAATTCACCTTTGATGGCAGGATTGTCGAG
GGGCGCGTGGGTGATACCGT

Product: sarcosine oxidase delta subunit family protein

Products: NA

Alternate protein names: Sarcosine oxidase subunit D [H]

Number of amino acids: Translated: 100; Mature: 100

Protein sequence:

>100_residues
MLLIHCPYCDETLPELEFTYAGEAHIARPANPSEASDEDWEKFLFIRTNARGPHFERWRHIHGCGRFFNALRDTVSDKFL
ATYRAGAPRPDLDSVKKAAE

Sequences:

>Translated_100_residues
MLLIHCPYCDETLPELEFTYAGEAHIARPANPSEASDEDWEKFLFIRTNARGPHFERWRHIHGCGRFFNALRDTVSDKFL
ATYRAGAPRPDLDSVKKAAE
>Mature_100_residues
MLLIHCPYCDETLPELEFTYAGEAHIARPANPSEASDEDWEKFLFIRTNARGPHFERWRHIHGCGRFFNALRDTVSDKFL
ATYRAGAPRPDLDSVKKAAE

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG4311

COG function: function code E; Sarcosine oxidase delta subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006279 [H]

Pfam domain/function: PF04267 SoxD [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 11493; Mature: 11493

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLIHCPYCDETLPELEFTYAGEAHIARPANPSEASDEDWEKFLFIRTNARGPHFERWRH
CEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHH
IHGCGRFFNALRDTVSDKFLATYRAGAPRPDLDSVKKAAE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCC
>Mature Secondary Structure
MLLIHCPYCDETLPELEFTYAGEAHIARPANPSEASDEDWEKFLFIRTNARGPHFERWRH
CEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHH
IHGCGRFFNALRDTVSDKFLATYRAGAPRPDLDSVKKAAE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7543100 [H]