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The map label for this gene is agmR [H]

Identifier: 110632702

GI number: 110632702

Start: 381341

End: 381991

Strand: Reverse

Name: agmR [H]

Synonym: Meso_0341

Alternate gene names: 110632702

Gene position: 381991-381341 (Counterclockwise)

Preceding gene: 110632704

Following gene: 110632700

Centisome position: 8.66

GC content: 62.21

Gene sequence:

>651_bases
ATGAAGGTTCTTCTCGTCGACGATCATGTGCTGATCCGGGATGCGCTGCGGAGCGTCCTGCGCGAGGTGTGGGACCGCGC
GGCGATTATCGAAGCTGCGGACGCCCGGCAGGCCATGCACTCCATCGAGGCCAATCCGGATCTCGACCTGGTCCTGCTCG
ACCTCACCCTGCCAGACGGCAATGGCTTTGACACACTCAGCCGAATTCGCGAGCGCCATCCCGCCATGGCCGTGGTTATT
CTATCGGCCAGTGACGACCGCGACGCGATTACCAGGGCTTTCGAGCTTGGCGTTGTCGGTTTCATCCCCAAGTCGGCCCA
GCGCGAGGTCATGCTGAGCGCGCTGAAACTGGTCTTCTCGGGCGGCATTTATGTTCCGCCGGAAGTTCTCGGCCGGCCAC
AGCCTCCGCCAGCCACTGCACGGCCGGAGCTTTCGCCCTCCCTGTCAAAGCTTGGACTTACCGAACGCCAGCTGGAAGTG
CTTGCGCTCATGATGCAGGGTAAGAGCAACAAAGCGATCTGCCGCGAGCTCGACATTGCCGAGCCCACCGTGAAGAACCA
CGTCACCTGCATACTAAAGGCGCTGAAGGTCTCAAACCGCACCGAGGCGGTGATCGCGGCCAGCGCTCTCGGGCACGGCG
ACGTAAGATAG

Upstream 100 bases:

>100_bases
ATTGTCGTGCAACGGAAAATCTCGCGGTGACGTTTCATCGGGGCGTGCTTTGGTCCTGGTCCTGAAGTATGGTGGGATCG
AATGAAACGAGCCGCCGCCG

Downstream 100 bases:

>100_bases
CCGGATAGCCGCCTGGTTCTAGTGCACCATCGTCGTTGCGTTTCCTGCCCTCAGGAGTTGGTTCAGCATGGCCCTCAGCC
GCATCGGCGTCACCGGTTTG

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MKVLLVDDHVLIRDALRSVLREVWDRAAIIEAADARQAMHSIEANPDLDLVLLDLTLPDGNGFDTLSRIRERHPAMAVVI
LSASDDRDAITRAFELGVVGFIPKSAQREVMLSALKLVFSGGIYVPPEVLGRPQPPPATARPELSPSLSKLGLTERQLEV
LALMMQGKSNKAICRELDIAEPTVKNHVTCILKALKVSNRTEAVIAASALGHGDVR

Sequences:

>Translated_216_residues
MKVLLVDDHVLIRDALRSVLREVWDRAAIIEAADARQAMHSIEANPDLDLVLLDLTLPDGNGFDTLSRIRERHPAMAVVI
LSASDDRDAITRAFELGVVGFIPKSAQREVMLSALKLVFSGGIYVPPEVLGRPQPPPATARPELSPSLSKLGLTERQLEV
LALMMQGKSNKAICRELDIAEPTVKNHVTCILKALKVSNRTEAVIAASALGHGDVR
>Mature_216_residues
MKVLLVDDHVLIRDALRSVLREVWDRAAIIEAADARQAMHSIEANPDLDLVLLDLTLPDGNGFDTLSRIRERHPAMAVVI
LSASDDRDAITRAFELGVVGFIPKSAQREVMLSALKLVFSGGIYVPPEVLGRPQPPPATARPELSPSLSKLGLTERQLEV
LALMMQGKSNKAICRELDIAEPTVKNHVTCILKALKVSNRTEAVIAASALGHGDVR

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=214, Percent_Identity=31.7757009345794, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1786747, Length=202, Percent_Identity=24.7524752475248, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787473, Length=206, Percent_Identity=32.5242718446602, Blast_Score=77, Evalue=6e-16,
Organism=Escherichia coli, GI1788222, Length=213, Percent_Identity=23.943661971831, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790102, Length=207, Percent_Identity=26.0869565217391, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788712, Length=198, Percent_Identity=23.2323232323232, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789937, Length=205, Percent_Identity=22.4390243902439, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23491; Mature: 23491

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLLVDDHVLIRDALRSVLREVWDRAAIIEAADARQAMHSIEANPDLDLVLLDLTLPDG
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCC
NGFDTLSRIRERHPAMAVVILSASDDRDAITRAFELGVVGFIPKSAQREVMLSALKLVFS
CCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCHHCCCCCHHHHHHHHHHHHHHHC
GGIYVPPEVLGRPQPPPATARPELSPSLSKLGLTERQLEVLALMMQGKSNKAICRELDIA
CCCCCCHHHCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCHHHHHHCCCC
EPTVKNHVTCILKALKVSNRTEAVIAASALGHGDVR
CCHHHHHHHHHHHHHHHCCCHHHHEEEHHCCCCCCC
>Mature Secondary Structure
MKVLLVDDHVLIRDALRSVLREVWDRAAIIEAADARQAMHSIEANPDLDLVLLDLTLPDG
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCC
NGFDTLSRIRERHPAMAVVILSASDDRDAITRAFELGVVGFIPKSAQREVMLSALKLVFS
CCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCHHCCCCCHHHHHHHHHHHHHHHC
GGIYVPPEVLGRPQPPPATARPELSPSLSKLGLTERQLEVLALMMQGKSNKAICRELDIA
CCCCCCHHHCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCHHHHHHCCCC
EPTVKNHVTCILKALKVSNRTEAVIAASALGHGDVR
CCHHHHHHHHHHHHHHHCCCHHHHEEEHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]