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The map label for this gene is 110632671

Identifier: 110632671

GI number: 110632671

Start: 343579

End: 345003

Strand: Reverse

Name: 110632671

Synonym: Meso_0310

Alternate gene names: NA

Gene position: 345003-343579 (Counterclockwise)

Preceding gene: 110632674

Following gene: 110632663

Centisome position: 7.82

GC content: 63.86

Gene sequence:

>1425_bases
TTGCTGAACGTTCAAAAGGTTTTTGCCGGCGCCCGCGTCAGGCGCATCCGGCATTCCAAGGGCCTCACCCAGACCGGGAT
GGCGGAGGGCCTGGGCATTTCGCCATCCTATCTCAACCTCATCGAGCGCAACCAGCGCCCGCTGACGGCGCAGCTCATCC
TGAAGCTGGTTTCGGTCTACAAGGTCGACCCTGACGAGTTGCAGACGGATGCCGGTGCTTCGCTTGCAAATCTCAGGGAG
GTTTTCTCCGATCCGCTTCTGTCGGGCGAACTGCCCGGCGAGAGCGAGCTTCTGGATTTTGCGGATGCAGCACCCAATGC
AGCAGCGGCGCTGATAAAGCTCTACCGAGCCTATCGCGAGCAGGCAGGCAGGCTCACCGACCTTTCGGACATGCTTTCCA
GGGAAGGCCGAACGGCTGCCATCTCGTCCGCTCGCCTGCCCGTGGACGAGGTGCGCGAGGTTTTCGAATGCCGGTCCAAC
CATTTTCCGGCACTTGAAGAGGAAGCAGAAGCCTTCCACCGCCTACTCGCTTCCGGAGGTGATTTGCTCGGCGTGCTCAA
GGCATGGTTCGTGCGCGAGCACGGCATCAGCGTGCGTGTCCTGCCAGCGGCGACGATGCCGACCTGGCGCCGGCGCTATG
ACCGCCATTCGCAGCGGCTCTTCATCTCCGAGCGCCTTTCCCCGGCCGATCAGCTGCGCGAGATCGCCATCGAAGCCTCG
CTCATCCGCATGCGCGCCGCGATAGCCATCGAGATCGACGCGCTCAAACTGCATTCGGACGAGGCGAAACGTCTCGCCCG
CTTCGAGCTCGGGCGCTATGCCGCCCATGCGCTCATGATGCCGTATGAGCCCTTTCTCGCGGCGGCTGAAAAATCACGTT
ACGACATCAGCGTCTTGGCGGCGCGATTCCAGGTCTCGTTCGAGCAAGCGGCCAATCGCCTGACGACGCTCGGGCGCGAG
GGCGCGGCAGGCGTCCCGTTTTTCCTGCTGGAGGTTGACGCGGCAGGCAACAGGCTGCGGCGCGCCGGCGCGCAAGGGTT
TCCTCAGAGCCGTTTCGGCGGTGGCTGCCCGAAGCTTGCCATTCACGCCGCTTTCGCCCAGCCGGGCCAAATACTGACCG
ATGCGGTGGCGATGCCGAATGGCGATGCCTTCCTCACGATCGCCCGTACGGTGGACGGGCCTCAGGCCGCATATCACGAG
CGGCCGCGCCGCACGGCCCTGCTTCTCGGCTGCGAGGCCGTGCACAAAGACCGCATCATCTATGGGGCGAGCTTTTCGGG
GAATCCGAACATGGCCACGCTCATTGGCCCCGCCTGCCGGGTTTGCGAGCGGCAAGGCTGTCTTGCGCGCGCCGAACCGC
CCCTCACCCGACCACTTGGCCTGGATGAGATGGTGACTGGATTCAGTGTCTATGATTTCCAGTAG

Upstream 100 bases:

>100_bases
GTCTTCGCCTGTTACAACGGAGACGGTAAAATTGTAAAAAATGTAAAAGAGCTATCGGGATGAAACACAGCCTTGTAAAT
TGCTGTAAAGGAGACTGGGC

Downstream 100 bases:

>100_bases
GATCTAAGCAAACCGTTCCAGAGCCTGCCGAAACAAGGCGGCATCCACATTGCCGCCGGAGGCAACCGCGATAACCGTGT
CAGCCGCCATCTCCTCGCCA

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 474; Mature: 474

Protein sequence:

>474_residues
MLNVQKVFAGARVRRIRHSKGLTQTGMAEGLGISPSYLNLIERNQRPLTAQLILKLVSVYKVDPDELQTDAGASLANLRE
VFSDPLLSGELPGESELLDFADAAPNAAAALIKLYRAYREQAGRLTDLSDMLSREGRTAAISSARLPVDEVREVFECRSN
HFPALEEEAEAFHRLLASGGDLLGVLKAWFVREHGISVRVLPAATMPTWRRRYDRHSQRLFISERLSPADQLREIAIEAS
LIRMRAAIAIEIDALKLHSDEAKRLARFELGRYAAHALMMPYEPFLAAAEKSRYDISVLAARFQVSFEQAANRLTTLGRE
GAAGVPFFLLEVDAAGNRLRRAGAQGFPQSRFGGGCPKLAIHAAFAQPGQILTDAVAMPNGDAFLTIARTVDGPQAAYHE
RPRRTALLLGCEAVHKDRIIYGASFSGNPNMATLIGPACRVCERQGCLARAEPPLTRPLGLDEMVTGFSVYDFQ

Sequences:

>Translated_474_residues
MLNVQKVFAGARVRRIRHSKGLTQTGMAEGLGISPSYLNLIERNQRPLTAQLILKLVSVYKVDPDELQTDAGASLANLRE
VFSDPLLSGELPGESELLDFADAAPNAAAALIKLYRAYREQAGRLTDLSDMLSREGRTAAISSARLPVDEVREVFECRSN
HFPALEEEAEAFHRLLASGGDLLGVLKAWFVREHGISVRVLPAATMPTWRRRYDRHSQRLFISERLSPADQLREIAIEAS
LIRMRAAIAIEIDALKLHSDEAKRLARFELGRYAAHALMMPYEPFLAAAEKSRYDISVLAARFQVSFEQAANRLTTLGRE
GAAGVPFFLLEVDAAGNRLRRAGAQGFPQSRFGGGCPKLAIHAAFAQPGQILTDAVAMPNGDAFLTIARTVDGPQAAYHE
RPRRTALLLGCEAVHKDRIIYGASFSGNPNMATLIGPACRVCERQGCLARAEPPLTRPLGLDEMVTGFSVYDFQ
>Mature_474_residues
MLNVQKVFAGARVRRIRHSKGLTQTGMAEGLGISPSYLNLIERNQRPLTAQLILKLVSVYKVDPDELQTDAGASLANLRE
VFSDPLLSGELPGESELLDFADAAPNAAAALIKLYRAYREQAGRLTDLSDMLSREGRTAAISSARLPVDEVREVFECRSN
HFPALEEEAEAFHRLLASGGDLLGVLKAWFVREHGISVRVLPAATMPTWRRRYDRHSQRLFISERLSPADQLREIAIEAS
LIRMRAAIAIEIDALKLHSDEAKRLARFELGRYAAHALMMPYEPFLAAAEKSRYDISVLAARFQVSFEQAANRLTTLGRE
GAAGVPFFLLEVDAAGNRLRRAGAQGFPQSRFGGGCPKLAIHAAFAQPGQILTDAVAMPNGDAFLTIARTVDGPQAAYHE
RPRRTALLLGCEAVHKDRIIYGASFSGNPNMATLIGPACRVCERQGCLARAEPPLTRPLGLDEMVTGFSVYDFQ

Specific function: Unknown

COG id: COG3800

COG function: function code R; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018653
- InterPro:   IPR010359
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF09856 DUF2083; PF06114 DUF955; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 52032; Mature: 52032

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNVQKVFAGARVRRIRHSKGLTQTGMAEGLGISPSYLNLIERNQRPLTAQLILKLVSVY
CCCHHHHHHHHHHHHHHHHCCCCHHCHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
KVDPDELQTDAGASLANLREVFSDPLLSGELPGESELLDFADAAPNAAAALIKLYRAYRE
CCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
QAGRLTDLSDMLSREGRTAAISSARLPVDEVREVFECRSNHFPALEEEAEAFHRLLASGG
HCCCCCCHHHHHHCCCCEEEHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
DLLGVLKAWFVREHGISVRVLPAATMPTWRRRYDRHSQRLFISERLSPADQLREIAIEAS
HHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHEEHHHHHCCHHHHHHHHHHHHH
LIRMRAAIAIEIDALKLHSDEAKRLARFELGRYAAHALMMPYEPFLAAAEKSRYDISVLA
HHHHHHEEEEEEEHEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHH
ARFQVSFEQAANRLTTLGREGAAGVPFFLLEVDAAGNRLRRAGAQGFPQSRFGGGCPKLA
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHCCCCCCCCCCCCCCCCHHH
IHAAFAQPGQILTDAVAMPNGDAFLTIARTVDGPQAAYHERPRRTALLLGCEAVHKDRII
HHHHHCCCCHHHHHHHCCCCCCEEEEEEEECCCCHHHHHCCCCCEEEEEEHHHHCCCCEE
YGASFSGNPNMATLIGPACRVCERQGCLARAEPPLTRPLGLDEMVTGFSVYDFQ
EECCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCEEECCC
>Mature Secondary Structure
MLNVQKVFAGARVRRIRHSKGLTQTGMAEGLGISPSYLNLIERNQRPLTAQLILKLVSVY
CCCHHHHHHHHHHHHHHHHCCCCHHCHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
KVDPDELQTDAGASLANLREVFSDPLLSGELPGESELLDFADAAPNAAAALIKLYRAYRE
CCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
QAGRLTDLSDMLSREGRTAAISSARLPVDEVREVFECRSNHFPALEEEAEAFHRLLASGG
HCCCCCCHHHHHHCCCCEEEHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
DLLGVLKAWFVREHGISVRVLPAATMPTWRRRYDRHSQRLFISERLSPADQLREIAIEAS
HHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHEEHHHHHCCHHHHHHHHHHHHH
LIRMRAAIAIEIDALKLHSDEAKRLARFELGRYAAHALMMPYEPFLAAAEKSRYDISVLA
HHHHHHEEEEEEEHEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHH
ARFQVSFEQAANRLTTLGREGAAGVPFFLLEVDAAGNRLRRAGAQGFPQSRFGGGCPKLA
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHCCCCCCCCCCCCCCCCHHH
IHAAFAQPGQILTDAVAMPNGDAFLTIARTVDGPQAAYHERPRRTALLLGCEAVHKDRII
HHHHHCCCCHHHHHHHCCCCCCEEEEEEEECCCCHHHHHCCCCCEEEEEEHHHHCCCCEE
YGASFSGNPNMATLIGPACRVCERQGCLARAEPPLTRPLGLDEMVTGFSVYDFQ
EECCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]