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The map label for this gene is flgC [H]

Identifier: 110632658

GI number: 110632658

Start: 333220

End: 333639

Strand: Reverse

Name: flgC [H]

Synonym: Meso_0297

Alternate gene names: 110632658

Gene position: 333639-333220 (Counterclockwise)

Preceding gene: 110632659

Following gene: 110632657

Centisome position: 7.56

GC content: 61.43

Gene sequence:

>420_bases
ATGGACCCGTTATCCACCGCCGTAAAAATTGCAGGATCGGGCCTTGCCGCCCAATCGGAGCGCATGCGCGTGGTCTCGGA
AAATCTTGCCAACGCACAATCGACAAGCGAGGTGCCGGGCGGAGATCCCTACCGCCGAAAGACGATCAGCTTCGCCGCGG
AACTGGGTCGCGGAAACGGCGGCGCCATGGTCGAGGTTTCCGCCATCGCGCGCGACCCGGCCGAATTTCCGGTCGAATAC
ATGCCTGGCCATGAGGCCGCAGACGAGTTCGGCTACGTGAAAATGCCCAACGTCAACATGCTGGTCGAGATGGCCGACAT
GCGCGAGGCGAACCGCGGGTACGAGGCCAACCTTCAGGTCGTCAAACAGGCGCGTGAACTCATCTCGATGACGATCGACC
TTCTGCGGAGCAACGGATGA

Upstream 100 bases:

>100_bases
AGCTGGTGAAAGCTGGGGAAGTGCGCCGTGCATTCGAGCTGAACACGGCGATTGTGAAGGCCTTTCACCGCATGATCCTG
ATGACGGCGAAGGGCTGACC

Downstream 100 bases:

>100_bases
TTTCCGGAATTGGAAACATAACCAATCTTCCCTCGACCGGCACGGAATCCGTGCTGCAGCAGGCGGAAACGGCCGCTCCG
ACAGACGGCGACGCCTTCTC

Product: flagellar basal body rod protein FlgC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MDPLSTAVKIAGSGLAAQSERMRVVSENLANAQSTSEVPGGDPYRRKTISFAAELGRGNGGAMVEVSAIARDPAEFPVEY
MPGHEAADEFGYVKMPNVNMLVEMADMREANRGYEANLQVVKQARELISMTIDLLRSNG

Sequences:

>Translated_139_residues
MDPLSTAVKIAGSGLAAQSERMRVVSENLANAQSTSEVPGGDPYRRKTISFAAELGRGNGGAMVEVSAIARDPAEFPVEY
MPGHEAADEFGYVKMPNVNMLVEMADMREANRGYEANLQVVKQARELISMTIDLLRSNG
>Mature_139_residues
MDPLSTAVKIAGSGLAAQSERMRVVSENLANAQSTSEVPGGDPYRRKTISFAAELGRGNGGAMVEVSAIARDPAEFPVEY
MPGHEAADEFGYVKMPNVNMLVEMADMREANRGYEANLQVVKQARELISMTIDLLRSNG

Specific function: Unknown

COG id: COG1558

COG function: function code N; Flagellar basal body rod protein

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flagella basal body rod proteins family [H]

Homologues:

Organism=Escherichia coli, GI1787314, Length=125, Percent_Identity=40, Blast_Score=92, Evalue=2e-20,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010930
- InterPro:   IPR001444
- InterPro:   IPR019776
- InterPro:   IPR006299 [H]

Pfam domain/function: PF06429 DUF1078; PF00460 Flg_bb_rod [H]

EC number: NA

Molecular weight: Translated: 14992; Mature: 14992

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.5 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.5 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPLSTAVKIAGSGLAAQSERMRVVSENLANAQSTSEVPGGDPYRRKTISFAAELGRGNG
CCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
GAMVEVSAIARDPAEFPVEYMPGHEAADEFGYVKMPNVNMLVEMADMREANRGYEANLQV
CCEEEEHHHHCCCCCCCCCCCCCCCCHHHCCEEECCCHHHHHHHHHHHHHCCCCCHHHHH
VKQARELISMTIDLLRSNG
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDPLSTAVKIAGSGLAAQSERMRVVSENLANAQSTSEVPGGDPYRRKTISFAAELGRGNG
CCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
GAMVEVSAIARDPAEFPVEYMPGHEAADEFGYVKMPNVNMLVEMADMREANRGYEANLQV
CCEEEEHHHHCCCCCCCCCCCCCCCCHHHCCEEECCCHHHHHHHHHHHHHCCCCCHHHHH
VKQARELISMTIDLLRSNG
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9858749; 11481430 [H]