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The map label for this gene is fliF [H]

Identifier: 110632647

GI number: 110632647

Start: 324206

End: 325843

Strand: Reverse

Name: fliF [H]

Synonym: Meso_0286

Alternate gene names: 110632647

Gene position: 325843-324206 (Counterclockwise)

Preceding gene: 110632648

Following gene: 110632646

Centisome position: 7.38

GC content: 63.06

Gene sequence:

>1638_bases
TTGCCTGAGCAGCTTCGAACCATTGTCGAAAACCTGAGGGCGCTTGGCCCTCGCCGGCTCGCCATGATGGGTGGAGTTCT
CGCGCTCACCTTGGCGGTGGTGACAGGGGGCGCGATCTACCTCAACCGCCCGGCCTATGAGACGCTCTATGTCGGGCTGG
AAAGGTCGGACGTAAATCAGATCGGCCTTGTTCTGGGCGAGGCGGGAATCCGATTCGATGTCGTATCGGATGGAACGGCG
GTGCTGGTGCCGACCGGGAAGACCGCGGAGGCACGCATGCTTCTCGCGGAAAAGGGCCTGCCCTCCAGCGCCAATGCCGG
CTATGAGCTATTCGACACCGTGGGCTCGCTTGGGCTCACCACTTTCATGCAAGAGGTCACCCGGGTTCGCGCGCTCGAAG
GCGAGATCGCACGCACGATCCGCTCCATCGCCGGCATCAGGGCCGCCCGCGTGCATATCGTCATGCCTGAGCGCGGCAAC
TTCCGCCGCGAAGGACAGGAGCCTTCCGCCTCTGTCGTCATCCGCACATCCGGCATCGACGGGGCCGCGAAAGCTGCAAG
CATCCGCTATCTGGTCGCGGCTGCGGTGCCGGGCCTTAGTGCGGAGAAAGTGACCGTCCTCGACTCCTCAGGCATGCTGC
TTGCGGCAGGCGACGACCCGGCAAACAACACTGCCCAGCGCTCCATCGGCATCGAACGCACGGTTGAAGCACAGGTGGAA
GAGAATATCCGCCGCGCACTGGCACCCTATCTTGGCCCCGACAATTTCCGCGCAAGCGTGAAAGCGGAGGTCAATACCGA
CACACGGCAGGTGGAGGAAGTGATCTTCGATCCGGATTCCCGCGTGGAGCGTTCGGTTCAGATCGTGCGCACGGCAGACA
GTGCAACGCGGGAGACCGCGGCGACACCCACCACCGTGTTGCAGAACCTGCCGCAGGAAGAACCAGCCCCGGCCGAACTG
CCCCGCTCCTCGGAAGAGAGCGAGCGGCGAGAGGAAACGACCAATTACGAGCTCAATACGAAGCGCATCGCCACCTCCAG
CAACGGCTATCAGGTCACACGGCTGTCCATTGCTGTCGTGGTAAACGAGGGGCGTCTTGCCGCCATTCTCGGCGACAACG
CAGCGCCGGATGCTCTGCAGACTCGCATCAGGGAGATTGAGACGGTCGTTGCTTCTGCCGCTGGCCTTAACGAGACGCGC
GGAGACGTGCTGAATGTGGCAGCCGTCGAGTTCGTCGACGGGCTGGATGGCGTCGAAATGGCGGAGCCTGGCCCATTGGC
CGCATTGGGCAGGCATTCCGGGACGATGATCAATGCACTGGCCTTCGTGCTCGCCGCCTTTTTCATCACCTGGTTTGGGC
TTAGGCCACTTGCCACTGCACTCACGCGCGGCCCAGAAATCGAAGCATCCGCTGCAGGAGAAGAAATTCAGGCACTTTCG
CAGGAAGGGGCTGACGAGCGGCTGGCGCTGACCGCCGGGAATGGCGTCCAAAGTTCGGAAGAGGCGAACGATGAGCCGCA
GTTGAAGATAAAGCCGGCGCCGCAGGCCCTGCTCGCACGCATGGTCGACCTCAATGAGGAACGGACCGCGGACATCCTCC
GCAAATGGGCGAGAGCGGAAGTGGAGGCCGCGGGCTGA

Upstream 100 bases:

>100_bases
AGCCTTCCTCCTGAGACGGCCCGCCCGCGCAGGAGCTCGAATGGTTCGCACAAGCTTCACCTCCTAGGCTGGAATCGTGT
TCCGCCTGGGAGCGAGTGCA

Downstream 100 bases:

>100_bases
TGCCGGCAATCGCTCTCGCGGATCTGCTGCCCGATTTCGGTGTGCAAACATCGGCTGTCCGCAATCCGGCACCCGCTTTT
GCCGCGGAGGAGAACCCGAA

Product: flagellar MS-ring protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 545; Mature: 544

Protein sequence:

>545_residues
MPEQLRTIVENLRALGPRRLAMMGGVLALTLAVVTGGAIYLNRPAYETLYVGLERSDVNQIGLVLGEAGIRFDVVSDGTA
VLVPTGKTAEARMLLAEKGLPSSANAGYELFDTVGSLGLTTFMQEVTRVRALEGEIARTIRSIAGIRAARVHIVMPERGN
FRREGQEPSASVVIRTSGIDGAAKAASIRYLVAAAVPGLSAEKVTVLDSSGMLLAAGDDPANNTAQRSIGIERTVEAQVE
ENIRRALAPYLGPDNFRASVKAEVNTDTRQVEEVIFDPDSRVERSVQIVRTADSATRETAATPTTVLQNLPQEEPAPAEL
PRSSEESERREETTNYELNTKRIATSSNGYQVTRLSIAVVVNEGRLAAILGDNAAPDALQTRIREIETVVASAAGLNETR
GDVLNVAAVEFVDGLDGVEMAEPGPLAALGRHSGTMINALAFVLAAFFITWFGLRPLATALTRGPEIEASAAGEEIQALS
QEGADERLALTAGNGVQSSEEANDEPQLKIKPAPQALLARMVDLNEERTADILRKWARAEVEAAG

Sequences:

>Translated_545_residues
MPEQLRTIVENLRALGPRRLAMMGGVLALTLAVVTGGAIYLNRPAYETLYVGLERSDVNQIGLVLGEAGIRFDVVSDGTA
VLVPTGKTAEARMLLAEKGLPSSANAGYELFDTVGSLGLTTFMQEVTRVRALEGEIARTIRSIAGIRAARVHIVMPERGN
FRREGQEPSASVVIRTSGIDGAAKAASIRYLVAAAVPGLSAEKVTVLDSSGMLLAAGDDPANNTAQRSIGIERTVEAQVE
ENIRRALAPYLGPDNFRASVKAEVNTDTRQVEEVIFDPDSRVERSVQIVRTADSATRETAATPTTVLQNLPQEEPAPAEL
PRSSEESERREETTNYELNTKRIATSSNGYQVTRLSIAVVVNEGRLAAILGDNAAPDALQTRIREIETVVASAAGLNETR
GDVLNVAAVEFVDGLDGVEMAEPGPLAALGRHSGTMINALAFVLAAFFITWFGLRPLATALTRGPEIEASAAGEEIQALS
QEGADERLALTAGNGVQSSEEANDEPQLKIKPAPQALLARMVDLNEERTADILRKWARAEVEAAG
>Mature_544_residues
PEQLRTIVENLRALGPRRLAMMGGVLALTLAVVTGGAIYLNRPAYETLYVGLERSDVNQIGLVLGEAGIRFDVVSDGTAV
LVPTGKTAEARMLLAEKGLPSSANAGYELFDTVGSLGLTTFMQEVTRVRALEGEIARTIRSIAGIRAARVHIVMPERGNF
RREGQEPSASVVIRTSGIDGAAKAASIRYLVAAAVPGLSAEKVTVLDSSGMLLAAGDDPANNTAQRSIGIERTVEAQVEE
NIRRALAPYLGPDNFRASVKAEVNTDTRQVEEVIFDPDSRVERSVQIVRTADSATRETAATPTTVLQNLPQEEPAPAELP
RSSEESERREETTNYELNTKRIATSSNGYQVTRLSIAVVVNEGRLAAILGDNAAPDALQTRIREIETVVASAAGLNETRG
DVLNVAAVEFVDGLDGVEMAEPGPLAALGRHSGTMINALAFVLAAFFITWFGLRPLATALTRGPEIEASAAGEEIQALSQ
EGADERLALTAGNGVQSSEEANDEPQLKIKPAPQALLARMVDLNEERTADILRKWARAEVEAAG

Specific function: The M ring may be actively involved in energy transduction [H]

COG id: COG1766

COG function: function code NU; Flagellar biosynthesis/type III secretory pathway lipoprotein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliF family [H]

Homologues:

Organism=Escherichia coli, GI1788248, Length=406, Percent_Identity=30.0492610837438, Blast_Score=158, Evalue=1e-39,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013556
- InterPro:   IPR000067
- InterPro:   IPR006182 [H]

Pfam domain/function: PF01514 YscJ_FliF; PF08345 YscJ_FliF_C [H]

EC number: NA

Molecular weight: Translated: 58079; Mature: 57948

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEQLRTIVENLRALGPRRLAMMGGVLALTLAVVTGGAIYLNRPAYETLYVGLERSDVNQ
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEEEEECCCCCCHH
IGLVLGEAGIRFDVVSDGTAVLVPTGKTAEARMLLAEKGLPSSANAGYELFDTVGSLGLT
HHHEEECCCCEEEEECCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
TFMQEVTRVRALEGEIARTIRSIAGIRAARVHIVMPERGNFRREGQEPSASVVIRTSGID
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCC
GAAKAASIRYLVAAAVPGLSAEKVTVLDSSGMLLAAGDDPANNTAQRSIGIERTVEAQVE
CHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEECCCCCCCHHHHHCCCHHHHHHHHH
ENIRRALAPYLGPDNFRASVKAEVNTDTRQVEEVIFDPDSRVERSVQIVRTADSATRETA
HHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHEECCCHHHHHCC
ATPTTVLQNLPQEEPAPAELPRSSEESERREETTNYELNTKRIATSSNGYQVTRLSIAVV
CCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEECEEEEECCCCEEEEEEEEEEE
VNEGRLAAILGDNAAPDALQTRIREIETVVASAAGLNETRGDVLNVAAVEFVDGLDGVEM
EECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCC
AEPGPLAALGRHSGTMINALAFVLAAFFITWFGLRPLATALTRGPEIEASAAGEEIQALS
CCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHH
QEGADERLALTAGNGVQSSEEANDEPQLKIKPAPQALLARMVDLNEERTADILRKWARAE
HCCCCCEEEEEECCCCCCCCCCCCCCCEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHCC
VEAAG
CCCCC
>Mature Secondary Structure 
PEQLRTIVENLRALGPRRLAMMGGVLALTLAVVTGGAIYLNRPAYETLYVGLERSDVNQ
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEEEEECCCCCCHH
IGLVLGEAGIRFDVVSDGTAVLVPTGKTAEARMLLAEKGLPSSANAGYELFDTVGSLGLT
HHHEEECCCCEEEEECCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
TFMQEVTRVRALEGEIARTIRSIAGIRAARVHIVMPERGNFRREGQEPSASVVIRTSGID
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCC
GAAKAASIRYLVAAAVPGLSAEKVTVLDSSGMLLAAGDDPANNTAQRSIGIERTVEAQVE
CHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEECCCCCCCHHHHHCCCHHHHHHHHH
ENIRRALAPYLGPDNFRASVKAEVNTDTRQVEEVIFDPDSRVERSVQIVRTADSATRETA
HHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHEECCCHHHHHCC
ATPTTVLQNLPQEEPAPAELPRSSEESERREETTNYELNTKRIATSSNGYQVTRLSIAVV
CCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEECEEEEECCCCEEEEEEEEEEE
VNEGRLAAILGDNAAPDALQTRIREIETVVASAAGLNETRGDVLNVAAVEFVDGLDGVEM
EECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCC
AEPGPLAALGRHSGTMINALAFVLAAFFITWFGLRPLATALTRGPEIEASAAGEEIQALS
CCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHH
QEGADERLALTAGNGVQSSEEANDEPQLKIKPAPQALLARMVDLNEERTADILRKWARAE
HCCCCCEEEEEECCCCCCCCCCCCCCCEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHCC
VEAAG
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9858749; 11481430 [H]