Click here to switch to the map view.

The map label for this gene is ycgB [H]

Identifier: 110632618

GI number: 110632618

Start: 290628

End: 292178

Strand: Direct

Name: ycgB [H]

Synonym: Meso_0257

Alternate gene names: 110632618

Gene position: 290628-292178 (Clockwise)

Preceding gene: 110632617

Following gene: 110632664

Centisome position: 6.59

GC content: 57.38

Gene sequence:

>1551_bases
ATGCCAGGCTCGAAATCTGCTGCAGGGTCGAAACTTCTCTTCGCCGGCTCGGACTGGAACTTTGCGACTTTGTCGCGAAC
TTACGATGCGATCGAGAAGATCGCACTCGAAGAGTTGCATCTGGATGTCTACCCCAACCAGCTCGAGATAATCTCCTCAG
AGCAGATGCTTGACGCCTATTCCTCGGTCGGCATGCCGTTGATGTACCAGCACTGGTCCTTCGGCAAGCGCTTCGTTTTC
GAGGACCATTTGTATCGCTCGGGGCGGCGGGGCCTTGCCTATGAGCTGGTGATCAACTCCAATCCCTGCATCGCCTATCT
GATGGAAGAGAACACCATGGCGATGCAGGCCCTGGTGACCGCGCATGCCTCCTTCGGCCACAACCATTTCTTCAAGAACA
ATTATCTGTTCCAGCAGTGGACCGATGCGAGTGCCATTCTGAGCTACATGGAGTTCGCCAAGAAGTATATCGCCAGATGC
GAGGAGCGTTACGGGACGCCGGCGGTGGAAGTGATCCTTGATTCCGCGCATGCGCTGATGGACCAAGGCGTTTTCCGCTA
TCGTCGTCCGCCGCGCCTTTCTTCCGAAAAGGAACGGGAGCGCGCACGCGAGCGTCTGGAATACGAAGAGCAAACATTCA
GCGATCTCTGGAGGACACTGCCGCCGCGCACCTCGGAAGACGACGCGGACGAGGTTGAGCAGGAAGTTGCCGAGCGCAAG
AAAAAGCTGAACCTGCCTGAAGAGAATCTCCTCTATTTTCTCGAGAAGAACAGCCTCATCCTGCAGCCTTGGCAGCGGGA
ACTCCTGCGTATCGTGCGCGTGATTGCGCAGTATTTTTATCCGCAGCGGCAGACCAAGGTGATGAACGAAGGTTGTGCCA
CCTTCGTCCACTACTACATCATGAACCGGCTCTACGATCAGGAGAAGATCTCCGAAGGCGCGATGCTGGAAATCCTCCAG
AGCCATACGAACGTCGTCTTCCAGCCCGATTTCGATGATCCGCGCTTCCCCGGAATCAACCCTTACGCGCTGGGTTTCGC
GCTGATGCAGGACATCCAGCGCATCTGCAACGAACCCACGCCGGAGGATCGTGAGTGGTTCCCCGACATCGCCGGCACGG
GCAACTGGCGCGAAACGCTGCTCGATGCCTGGGCGAACCATCGCGACGAATCTTTTATATTGCAGTATCTGAGCCCCACG
CTCATCCGCAATTTCAGGCTGTTCCTGCTCAAGGACAAGTCGAGCGACCCCTATTGCGAAGTGGCCTCCATTCACAACGA
GCGGGGATACGAGGCTATCCGGGCGGCACTAGCCCGCAGCTACGACATTGGGGTGAGTCAGCCGGATATCCAGGTGGTCG
ATGTGGACCTTTTGGGGGACCGCCATCTGCGCCTGCAGCACAATGTGAAGAACGGCGTGCTTTTGGACGAGGAAAGCCGC
GATTCAACGCTGCGGCACGTCTGCCGCCTCTGGGGCTATAATGTAAGCCTTGCGGGCGTGGACGCGGAAACAGAGTCAAG
GCTTTACGAGACCTCGGCCACTGCAGGCTGA

Upstream 100 bases:

>100_bases
ACTTTCAGATGACGCGGATAGCGCGGCCGGCGGATATCTACCCTGTCTTCCGAAAGCTCTTTGCCCGACAATCGGCCTCC
CCGACGCGCAGGTGACAGGA

Downstream 100 bases:

>100_bases
CCGGAGCTGCTACTCCAGGAAAACGCTGACGCTGGCGGTGCGCCCTGCCGCGTCGATGACGGTGAGCGTGGAAGCGCCGC
CCCCATCAGGCGCCCATGAG

Product: SpoVR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 516; Mature: 515

Protein sequence:

>516_residues
MPGSKSAAGSKLLFAGSDWNFATLSRTYDAIEKIALEELHLDVYPNQLEIISSEQMLDAYSSVGMPLMYQHWSFGKRFVF
EDHLYRSGRRGLAYELVINSNPCIAYLMEENTMAMQALVTAHASFGHNHFFKNNYLFQQWTDASAILSYMEFAKKYIARC
EERYGTPAVEVILDSAHALMDQGVFRYRRPPRLSSEKERERARERLEYEEQTFSDLWRTLPPRTSEDDADEVEQEVAERK
KKLNLPEENLLYFLEKNSLILQPWQRELLRIVRVIAQYFYPQRQTKVMNEGCATFVHYYIMNRLYDQEKISEGAMLEILQ
SHTNVVFQPDFDDPRFPGINPYALGFALMQDIQRICNEPTPEDREWFPDIAGTGNWRETLLDAWANHRDESFILQYLSPT
LIRNFRLFLLKDKSSDPYCEVASIHNERGYEAIRAALARSYDIGVSQPDIQVVDVDLLGDRHLRLQHNVKNGVLLDEESR
DSTLRHVCRLWGYNVSLAGVDAETESRLYETSATAG

Sequences:

>Translated_516_residues
MPGSKSAAGSKLLFAGSDWNFATLSRTYDAIEKIALEELHLDVYPNQLEIISSEQMLDAYSSVGMPLMYQHWSFGKRFVF
EDHLYRSGRRGLAYELVINSNPCIAYLMEENTMAMQALVTAHASFGHNHFFKNNYLFQQWTDASAILSYMEFAKKYIARC
EERYGTPAVEVILDSAHALMDQGVFRYRRPPRLSSEKERERARERLEYEEQTFSDLWRTLPPRTSEDDADEVEQEVAERK
KKLNLPEENLLYFLEKNSLILQPWQRELLRIVRVIAQYFYPQRQTKVMNEGCATFVHYYIMNRLYDQEKISEGAMLEILQ
SHTNVVFQPDFDDPRFPGINPYALGFALMQDIQRICNEPTPEDREWFPDIAGTGNWRETLLDAWANHRDESFILQYLSPT
LIRNFRLFLLKDKSSDPYCEVASIHNERGYEAIRAALARSYDIGVSQPDIQVVDVDLLGDRHLRLQHNVKNGVLLDEESR
DSTLRHVCRLWGYNVSLAGVDAETESRLYETSATAG
>Mature_515_residues
PGSKSAAGSKLLFAGSDWNFATLSRTYDAIEKIALEELHLDVYPNQLEIISSEQMLDAYSSVGMPLMYQHWSFGKRFVFE
DHLYRSGRRGLAYELVINSNPCIAYLMEENTMAMQALVTAHASFGHNHFFKNNYLFQQWTDASAILSYMEFAKKYIARCE
ERYGTPAVEVILDSAHALMDQGVFRYRRPPRLSSEKERERARERLEYEEQTFSDLWRTLPPRTSEDDADEVEQEVAERKK
KLNLPEENLLYFLEKNSLILQPWQRELLRIVRVIAQYFYPQRQTKVMNEGCATFVHYYIMNRLYDQEKISEGAMLEILQS
HTNVVFQPDFDDPRFPGINPYALGFALMQDIQRICNEPTPEDREWFPDIAGTGNWRETLLDAWANHRDESFILQYLSPTL
IRNFRLFLLKDKSSDPYCEVASIHNERGYEAIRAALARSYDIGVSQPDIQVVDVDLLGDRHLRLQHNVKNGVLLDEESRD
STLRHVCRLWGYNVSLAGVDAETESRLYETSATAG

Specific function: Unknown

COG id: COG2719

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis spoVR [H]

Homologues:

Organism=Escherichia coli, GI1787437, Length=482, Percent_Identity=56.0165975103734, Blast_Score=555, Evalue=1e-159,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007390 [H]

Pfam domain/function: PF04293 SpoVR [H]

EC number: NA

Molecular weight: Translated: 59907; Mature: 59776

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGSKSAAGSKLLFAGSDWNFATLSRTYDAIEKIALEELHLDVYPNQLEIISSEQMLDAY
CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHEECCCHHEEECHHHHHHHH
SSVGMPLMYQHWSFGKRFVFEDHLYRSGRRGLAYELVINSNPCIAYLMEENTMAMQALVT
HHCCCCEEEHHHCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCEEEEECCCHHHHHHHHH
AHASFGHNHFFKNNYLFQQWTDASAILSYMEFAKKYIARCEERYGTPAVEVILDSAHALM
HHHHCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
DQGVFRYRRPPRLSSEKERERARERLEYEEQTFSDLWRTLPPRTSEDDADEVEQEVAERK
HCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
KKLNLPEENLLYFLEKNSLILQPWQRELLRIVRVIAQYFYPQRQTKVMNEGCATFVHYYI
HHCCCCHHHEEEEEECCCEEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
MNRLYDQEKISEGAMLEILQSHTNVVFQPDFDDPRFPGINPYALGFALMQDIQRICNEPT
HHHHHHHHHHCCHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
PEDREWFPDIAGTGNWRETLLDAWANHRDESFILQYLSPTLIRNFRLFLLKDKSSDPYCE
CCCHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCCCH
VASIHNERGYEAIRAALARSYDIGVSQPDIQVVDVDLLGDRHLRLQHNVKNGVLLDEESR
HHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCEEECCCCC
DSTLRHVCRLWGYNVSLAGVDAETESRLYETSATAG
HHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
PGSKSAAGSKLLFAGSDWNFATLSRTYDAIEKIALEELHLDVYPNQLEIISSEQMLDAY
CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHEECCCHHEEECHHHHHHHH
SSVGMPLMYQHWSFGKRFVFEDHLYRSGRRGLAYELVINSNPCIAYLMEENTMAMQALVT
HHCCCCEEEHHHCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCEEEEECCCHHHHHHHHH
AHASFGHNHFFKNNYLFQQWTDASAILSYMEFAKKYIARCEERYGTPAVEVILDSAHALM
HHHHCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
DQGVFRYRRPPRLSSEKERERARERLEYEEQTFSDLWRTLPPRTSEDDADEVEQEVAERK
HCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
KKLNLPEENLLYFLEKNSLILQPWQRELLRIVRVIAQYFYPQRQTKVMNEGCATFVHYYI
HHCCCCHHHEEEEEECCCEEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
MNRLYDQEKISEGAMLEILQSHTNVVFQPDFDDPRFPGINPYALGFALMQDIQRICNEPT
HHHHHHHHHHCCHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
PEDREWFPDIAGTGNWRETLLDAWANHRDESFILQYLSPTLIRNFRLFLLKDKSSDPYCE
CCCHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCCCH
VASIHNERGYEAIRAALARSYDIGVSQPDIQVVDVDLLGDRHLRLQHNVKNGVLLDEESR
HHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCEEECCCCC
DSTLRHVCRLWGYNVSLAGVDAETESRLYETSATAG
HHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 7906689 [H]