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The map label for this gene is ssb [H]

Identifier: 110632566

GI number: 110632566

Start: 241642

End: 242079

Strand: Reverse

Name: ssb [H]

Synonym: Meso_0204

Alternate gene names: 110632566

Gene position: 242079-241642 (Counterclockwise)

Preceding gene: 110632567

Following gene: 110632565

Centisome position: 5.49

GC content: 54.79

Gene sequence:

>438_bases
ATGGCTGGATCACTGAATCGCGTATTCCTCATTGGGAACCTTGGGGCAGACCCCGAGGTCCGCCGCCTGAACAACGGTTC
ACCGGTAGTGAACCTACGAATCGCGACCGCCGAGACTTGGCGCGACAAGAATACGGGTGAGCGCAAGGAAAACACGCAAT
GGCACAACGTGGTGATCTTCAATGAGATGATCGCCAAGGTTGCTGAGCAGTTCCTGCGCAAGGGCATGAAGGTCTTTGTT
GAAGGCTCTCTGCAAACCCGCAAATGGCAGGACCAGCAGGGTAACGACAAATACACGACCGAGATTGTCCTGCAGAAGTA
TCGCGGCGAGCTTCAGATGCTCGATGCACGGCAAATATCCGATGTGGTCAACAACCATCAGCCTGAGCAAAGCGGTTACG
TCCACGACGATCTGGACGACGACCCATTGCCTTTCTAG

Upstream 100 bases:

>100_bases
GGAAGGCGCTCGTCAAGGAAGAGCTTGAGAAGCGGCGGCTTCAGCTCCGCGCCGAAGCGGCCAAAGAACCAATCGACTAC
ACAATGGCAGGATAATCATC

Downstream 100 bases:

>100_bases
GAGCAGCGGCGATGGCGGGGAAACAGTCAGAAAAGCCGATCTATGCCTTCATCAGACGCGGAAACAATCTCGTGCCAGAG
ATGGACATGGATTTGCGCGC

Product: single-strand binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 145; Mature: 144

Protein sequence:

>145_residues
MAGSLNRVFLIGNLGADPEVRRLNNGSPVVNLRIATAETWRDKNTGERKENTQWHNVVIFNEMIAKVAEQFLRKGMKVFV
EGSLQTRKWQDQQGNDKYTTEIVLQKYRGELQMLDARQISDVVNNHQPEQSGYVHDDLDDDPLPF

Sequences:

>Translated_145_residues
MAGSLNRVFLIGNLGADPEVRRLNNGSPVVNLRIATAETWRDKNTGERKENTQWHNVVIFNEMIAKVAEQFLRKGMKVFV
EGSLQTRKWQDQQGNDKYTTEIVLQKYRGELQMLDARQISDVVNNHQPEQSGYVHDDLDDDPLPF
>Mature_144_residues
AGSLNRVFLIGNLGADPEVRRLNNGSPVVNLRIATAETWRDKNTGERKENTQWHNVVIFNEMIAKVAEQFLRKGMKVFVE
GSLQTRKWQDQQGNDKYTTEIVLQKYRGELQMLDARQISDVVNNHQPEQSGYVHDDLDDDPLPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Homo sapiens, GI4507231, Length=105, Percent_Identity=31.4285714285714, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI1790494, Length=114, Percent_Identity=56.140350877193, Blast_Score=139, Evalue=7e-35,
Organism=Drosophila melanogaster, GI85725234, Length=100, Percent_Identity=34, Blast_Score=67, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24647376, Length=100, Percent_Identity=34, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 16684; Mature: 16553

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGSLNRVFLIGNLGADPEVRRLNNGSPVVNLRIATAETWRDKNTGERKENTQWHNVVIF
CCCCCCEEEEEECCCCCCHHEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHEEEHH
NEMIAKVAEQFLRKGMKVFVEGSLQTRKWQDQQGNDKYTTEIVLQKYRGELQMLDARQIS
HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEHHHHHHH
DVVNNHQPEQSGYVHDDLDDDPLPF
HHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AGSLNRVFLIGNLGADPEVRRLNNGSPVVNLRIATAETWRDKNTGERKENTQWHNVVIF
CCCCCEEEEEECCCCCCHHEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHEEEHH
NEMIAKVAEQFLRKGMKVFVEGSLQTRKWQDQQGNDKYTTEIVLQKYRGELQMLDARQIS
HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEHHHHHHH
DVVNNHQPEQSGYVHDDLDDDPLPF
HHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968 [H]