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The map label for this gene is atoE [H]

Identifier: 109947499

GI number: 109947499

Start: 835332

End: 836696

Strand: Reverse

Name: atoE [H]

Synonym: Hac_0955

Alternate gene names: 109947499

Gene position: 836696-835332 (Counterclockwise)

Preceding gene: 109947500

Following gene: 109947498

Centisome position: 53.84

GC content: 40.66

Gene sequence:

>1365_bases
ATGTTTTTATTAAGGCATTTGACTTCAGCGTGCGTGTTTTTGGCTTCTAAATGCTTGCCAGACTCCTTTGTTTTAGTGAC
TCTTTTATCGTTCATTGTGTTTATTCTTGTTTATTGTTTGACAGGACAAGACGCGTCGTCTGTTATTTCTAGCTGGGGGA
ATGGTGCTTGGACGCTTTTAGGCTTTTCTATGCAAATGGCTCTTATTTTGGTGCTAGGTCAGGCTTTGGCTAGTGCTAAA
TTGGTCCAAAAACTCTTAAAATATCTAGCGTCTTTACCTAAAGGGTATTATGCGGCTTTATTGTTGGTTACTTTTTTATC
GTTAATCGCTAATTGGATCAATTGGGGTTTTGGCTTGGTGATTAGCACGATTTTTGCAAAAGAGATTGCAAAGAATGTTA
AAGGAGTGGATTATAGGTTGCTTATTGCTAGTGCTTATTCGGGTTTTGTGATTTGGCATGGAGGTTTGTCAGGCTCGATC
CCTTTAAGCGTTGCAACCCAAAATGAGAATTTGTCTAAAATCAGTGCTGGGGTGATTGAGAAAGCTATCCCCATTAGCCA
AACGATTTTTTCCACCTATAATTTAATCATTGTGGGGATCATTCTTATAGGATTACCCTTTTTAATGGCGGTAATCCACC
CTAAAAAGGACGAAATTATTGAAATTGACACAAAGCTTTTAAAAGATGAATACAAAGAGACTGAACTCATTGATCACCAA
AAAGACAAAACGATCGCTCATTTTTTGGAAAACAGCCCCTTGCTTTCTTATCTTTTGGTTTTTTTGGGTTTGGGGTATCT
TGGTCTTTATTTTTTTAAAGGGGGCGGACTTAGTTTAAATATCGTCAATACGATTTTCCTTTTTTTAGGGATCTTGCTCC
ATAAAACCCCTTTAGCTTATGTGAAAGCGATCAATCATTCCACTAGGAGCGTGGCTGGGATTTTGCTCCAATTCCCTTTT
TACGCTGGGATTATGGGGATGATGGCAGGGCATAGTGAAGGGGGGCATTCTTTAGCGCAAATGCTTTCTTTAGCTTTCAC
GCACATCGCTAATGAAAAAACTTTCGCGCTCATGACTTTTTTGAGTGCGGGGATTGTCAATATTTTCATTCCGTCTGGTG
GGGGGCAATGGGCGATTCAAGCTCCTATCATGCTCCCTGCAGGGCAAAGCTTGGGGATAGATCCGGGCGTGGTTTCTATG
GCTATCGCTTGGGGGGACGCTTGGACGAATATGATACAGCCTTTTTGGGCTTTTCCTGCATTAGCTATCGCCGGTTTGGG
TGCTAAAGACATTATGGGTTATTGCGTTTTGACTTTAATTTTTGTCGCTTTAGTGGTGTGTGGGGTGTTTTATTTTTTAG
TGTGA

Upstream 100 bases:

>100_bases
TTAGTGGAGTTGCAAGAGGGTGTGAGCGTTGATCAAGTCAAGGAAAAGACAGAAGCTGAGTTTGGAGTGCACTTGTAACT
TATAAAAAAGGGGTGTGCTT

Downstream 100 bases:

>100_bases
GTTTTTCTAAACCCACGCTCATTTGCACTTTTTTGATGGAGTAAAAAGTTTTTTCTTTTTATTCCTTAAACGCTCTTACA
ATCAAGCCTTATTTTGCTAC

Product: short-chain fatty acids transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 454; Mature: 454

Protein sequence:

>454_residues
MFLLRHLTSACVFLASKCLPDSFVLVTLLSFIVFILVYCLTGQDASSVISSWGNGAWTLLGFSMQMALILVLGQALASAK
LVQKLLKYLASLPKGYYAALLLVTFLSLIANWINWGFGLVISTIFAKEIAKNVKGVDYRLLIASAYSGFVIWHGGLSGSI
PLSVATQNENLSKISAGVIEKAIPISQTIFSTYNLIIVGIILIGLPFLMAVIHPKKDEIIEIDTKLLKDEYKETELIDHQ
KDKTIAHFLENSPLLSYLLVFLGLGYLGLYFFKGGGLSLNIVNTIFLFLGILLHKTPLAYVKAINHSTRSVAGILLQFPF
YAGIMGMMAGHSEGGHSLAQMLSLAFTHIANEKTFALMTFLSAGIVNIFIPSGGGQWAIQAPIMLPAGQSLGIDPGVVSM
AIAWGDAWTNMIQPFWAFPALAIAGLGAKDIMGYCVLTLIFVALVVCGVFYFLV

Sequences:

>Translated_454_residues
MFLLRHLTSACVFLASKCLPDSFVLVTLLSFIVFILVYCLTGQDASSVISSWGNGAWTLLGFSMQMALILVLGQALASAK
LVQKLLKYLASLPKGYYAALLLVTFLSLIANWINWGFGLVISTIFAKEIAKNVKGVDYRLLIASAYSGFVIWHGGLSGSI
PLSVATQNENLSKISAGVIEKAIPISQTIFSTYNLIIVGIILIGLPFLMAVIHPKKDEIIEIDTKLLKDEYKETELIDHQ
KDKTIAHFLENSPLLSYLLVFLGLGYLGLYFFKGGGLSLNIVNTIFLFLGILLHKTPLAYVKAINHSTRSVAGILLQFPF
YAGIMGMMAGHSEGGHSLAQMLSLAFTHIANEKTFALMTFLSAGIVNIFIPSGGGQWAIQAPIMLPAGQSLGIDPGVVSM
AIAWGDAWTNMIQPFWAFPALAIAGLGAKDIMGYCVLTLIFVALVVCGVFYFLV
>Mature_454_residues
MFLLRHLTSACVFLASKCLPDSFVLVTLLSFIVFILVYCLTGQDASSVISSWGNGAWTLLGFSMQMALILVLGQALASAK
LVQKLLKYLASLPKGYYAALLLVTFLSLIANWINWGFGLVISTIFAKEIAKNVKGVDYRLLIASAYSGFVIWHGGLSGSI
PLSVATQNENLSKISAGVIEKAIPISQTIFSTYNLIIVGIILIGLPFLMAVIHPKKDEIIEIDTKLLKDEYKETELIDHQ
KDKTIAHFLENSPLLSYLLVFLGLGYLGLYFFKGGGLSLNIVNTIFLFLGILLHKTPLAYVKAINHSTRSVAGILLQFPF
YAGIMGMMAGHSEGGHSLAQMLSLAFTHIANEKTFALMTFLSAGIVNIFIPSGGGQWAIQAPIMLPAGQSLGIDPGVVSM
AIAWGDAWTNMIQPFWAFPALAIAGLGAKDIMGYCVLTLIFVALVVCGVFYFLV

Specific function: Responsible for the intake of short-chain fatty acids [H]

COG id: COG2031

COG function: function code I; Short chain fatty acids transporter

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788553, Length=431, Percent_Identity=45.707656612529, Blast_Score=379, Evalue=1e-106,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006161
- InterPro:   IPR006160 [H]

Pfam domain/function: PF02667 SCFA_trans [H]

EC number: NA

Molecular weight: Translated: 49176; Mature: 49176

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLLRHLTSACVFLASKCLPDSFVLVTLLSFIVFILVYCLTGQDASSVISSWGNGAWTLL
CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEHHH
GFSMQMALILVLGQALASAKLVQKLLKYLASLPKGYYAALLLVTFLSLIANWINWGFGLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ISTIFAKEIAKNVKGVDYRLLIASAYSGFVIWHGGLSGSIPLSVATQNENLSKISAGVIE
HHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCEEEEECCCCHHHHHHHHHH
KAIPISQTIFSTYNLIIVGIILIGLPFLMAVIHPKKDEIIEIDTKLLKDEYKETELIDHQ
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC
KDKTIAHFLENSPLLSYLLVFLGLGYLGLYFFKGGGLSLNIVNTIFLFLGILLHKTPLAY
CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCHHHH
VKAINHSTRSVAGILLQFPFYAGIMGMMAGHSEGGHSLAQMLSLAFTHIANEKTFALMTF
HHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
LSAGIVNIFIPSGGGQWAIQAPIMLPAGQSLGIDPGVVSMAIAWGDAWTNMIQPFWAFPA
HHCCCEEEEEECCCCCEEEECCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LAIAGLGAKDIMGYCVLTLIFVALVVCGVFYFLV
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MFLLRHLTSACVFLASKCLPDSFVLVTLLSFIVFILVYCLTGQDASSVISSWGNGAWTLL
CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEHHH
GFSMQMALILVLGQALASAKLVQKLLKYLASLPKGYYAALLLVTFLSLIANWINWGFGLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ISTIFAKEIAKNVKGVDYRLLIASAYSGFVIWHGGLSGSIPLSVATQNENLSKISAGVIE
HHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCEEEEECCCCHHHHHHHHHH
KAIPISQTIFSTYNLIIVGIILIGLPFLMAVIHPKKDEIIEIDTKLLKDEYKETELIDHQ
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC
KDKTIAHFLENSPLLSYLLVFLGLGYLGLYFFKGGGLSLNIVNTIFLFLGILLHKTPLAY
CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCHHHH
VKAINHSTRSVAGILLQFPFYAGIMGMMAGHSEGGHSLAQMLSLAFTHIANEKTFALMTF
HHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
LSAGIVNIFIPSGGGQWAIQAPIMLPAGQSLGIDPGVVSMAIAWGDAWTNMIQPFWAFPA
HHCCCEEEEEECCCCCEEEECCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LAIAGLGAKDIMGYCVLTLIFVALVVCGVFYFLV
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]