| Definition | Helicobacter acinonychis str. Sheeba chromosome, complete genome. |
|---|---|
| Accession | NC_008229 |
| Length | 1,553,927 |
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The map label for this gene is frpB [H]
Identifier: 109947276
GI number: 109947276
Start: 613795
End: 616239
Strand: Direct
Name: frpB [H]
Synonym: Hac_0702
Alternate gene names: 109947276
Gene position: 613795-616239 (Clockwise)
Preceding gene: 109947275
Following gene: 109947277
Centisome position: 39.5
GC content: 40.61
Gene sequence:
>2445_bases ATGAACGATAAGCGTTTTAGAAAATATTGTAGTTTTTCTATTTTTTTGTCCTTATTAGGAATGTTTGAAGCAGAAGCTAA AGAAGAAAAAGAAGAAAGAAAGACAGAAAGAAAAAAAGATAAAAAGGAGAATACCCAACACACTCTAGGCAAAGTTACCA CTCAAGCGGTCAAAATCTTTAATTACAACAACCAAACAACTATTTCAAGTAAAGAATTAGAGAGAAGACAAGCCAACCAA ATCAGCGATATGTTTAGGAGAAACCCTAATATCAATGTAGGTGGTGGTGCGGTCATGGCGCAAAAAATTTATGTGCGCGG TATTGAAGACAGACTGACTAGGGTTACGGTAGATGGCGCAGCACAAATGGGTGCTAGCTATGGGCATCAAGGCAATACGA TTATTGACCCCGGAATGCTTAAAAGCGTGGTGGTCACTAAAGGAGCGGCTCAAGCGAGCGCGGGGCCTATGGCTTTAATT GGTGCGATTAAAATGGAGACTAAAAGCGCGAATGATTTTATCCCTAGAGGTAAAGACTATGCGATGAGTGGGGCTGCAAC TTTTTTAACCAACTTTGGGGATAGAGAAACCGTTATGGGCGCTTATCGTAATAATCATTTTGATGTGCTTTTGTATTACA CGCATCAAAATATTTTTTATTATCGTGATGGGGATAACGCCACAAAAGATCTTTTCAAGCCCAAAGAAAGCAATAAGGTT TCAGGAAGCCCTAGCGAGCAAAACAATGTGATGGCTAAAATCAATGGTTATTTAAGCGAAAGAGATATCCTAACGCTTAG TTATAACATGACTAGAGATAACGCTAATCGCCCTTTAAGAGCGAATTTTACAGGCACTTTTTTACCCTATTCTTGCGGTG ATTTTAACGCTTTCCCTAACGAGAAAAACCCTAGCGATTGTTTGTTTGAAAATGACGCCAGCTTGTTTAAAACTTATAGC GTCAATTTAGTGCATAATGTGAGTTTGAATTATGAAAGAGAAGGGGGGAGTCGTTTTGGCGATCCTAAATTAAAGATCAA TGGTTATACGAGCATTAGGAATGTCAAAATTGACCCTCTTTTTAGGTCTACTGATATAGCGACCATAATTTCTTTTACGC CAAACCCACAACTCTCTCAAGGAGAAGAAAACAGATGCGTGGCGCAAGGAGGTATTTATGACGCCATTAAACAAACTTGT GCTATTACTTTTAAAAGCCTTGGAGGCGGTTCTGTCGTCGCTAATAAGGATTTATTTATCATCAATTCCGGATTTAATGC GAATGTGATCCATACCATAGACCATAAAAATGACAATCTTTTTGAATATGGGTTGAATTATCAAAATTTAACCACTTTTG ATAAGGCGATCCCTAATAGCGAATTGGTCAAACCGGGCGATGCCCCTGATGCTTGCTTAAGAGTTACAGGACCCAATGAT CCCAACATGAATGGGCGCTGCCAAAGGAATGGCGCTACGGCGAATGTGATTGGGGTGTATGCACAAGCGAACTACACTTT GCACCCTATGGTCACTTTAGGGGCGGGGACTCGTTATGATGTCTATACTTTAATGGATAAAGACTGGCAATTGCATGTCA CTCAAGGGTTTAGCCCTAGTGCGGCTTTAAATGTCTCGCCTTTAGAGGATTTGAATTTTAGGCTTTCTTATGCGTATGTC ACTAGAGGCCCTATGCCTGGAGGCTTGGTGTGGATGCGTCAAGACAATTTGCGTTATAACCGAAATTTAAAGCCAGAAAT TGGGCAAAATGTGGAATTTAACACTGAATATGGCAGTAAGTATTTTGATTTTAGAGCTGCTGGTTTTGTCCAGTTGATCT CTAATTATATCAATCAATTTTCTTCAACGCTTTTTGTGACTAACTTGCCCCCAAAAGATATTATTTATGTGCCAGGCTAT GAAGTTTCAGGGACGGCTAAGTATAAGGGTTTTTCTTTAGGCTTGAGCGTGGCGCGATCATGGCCTTCTTTAAGAAAGCA TTTGATCGCTGATGTGTATGAATTGGCTGCCACGGTGGGTAATGTGTTTATTTTAACGGCAAGCTATACGGTCCCACGCA TTGGGCTTAGTATCACTTGGCTTTCACGCTTTGTGACCGATTTAGATTATTGCTCTTATAGCCCTTATCGTAACGGCCCT ACGGATATTGACAGACGGCCTAGCAATTGCCCTAAAACGCCTGGGATTTTCCATGTGCATAAGCCCGGTTATGGGGTGAG CAGTTTTTTTATCACTTACAAGCCCACTTACAAAAAACTTGAAGGGTTGAGCTTGAACGCTGTTTTTAACAATGTTTTTA ACAAACAATACATCGATCAAGCAAGCCCAGTGATGAGCCCTGATGAACCCAATCAAGACAAATACGCAAGGGGCATGGCA GAGCCTGGCTTTAACGCTAGATTTGAAATCGCTTATAAGTTTTAA
Upstream 100 bases:
>100_bases CTCTAAAATTGCATATTTACTGACCATAACACTTTTTTAGCTATAATAAAAAGCCGTTGTTTTTTAAAAAACAATAATTA TTATAAATAGGATTTTAAGA
Downstream 100 bases:
>100_bases AAGTAGCAAATATGTGGTTTTAATGCTTATAACTTTAAACTCATTGATAATAAAGGGATTGTTTTTTATAAAAAAATGAA ACGAATAAAAAAATAAAAAA
Product: iron-regulated outer membrane protein
Products: NA
Alternate protein names: Brucella heme uptake protein A [H]
Number of amino acids: Translated: 814; Mature: 814
Protein sequence:
>814_residues MNDKRFRKYCSFSIFLSLLGMFEAEAKEEKEERKTERKKDKKENTQHTLGKVTTQAVKIFNYNNQTTISSKELERRQANQ ISDMFRRNPNINVGGGAVMAQKIYVRGIEDRLTRVTVDGAAQMGASYGHQGNTIIDPGMLKSVVVTKGAAQASAGPMALI GAIKMETKSANDFIPRGKDYAMSGAATFLTNFGDRETVMGAYRNNHFDVLLYYTHQNIFYYRDGDNATKDLFKPKESNKV SGSPSEQNNVMAKINGYLSERDILTLSYNMTRDNANRPLRANFTGTFLPYSCGDFNAFPNEKNPSDCLFENDASLFKTYS VNLVHNVSLNYEREGGSRFGDPKLKINGYTSIRNVKIDPLFRSTDIATIISFTPNPQLSQGEENRCVAQGGIYDAIKQTC AITFKSLGGGSVVANKDLFIINSGFNANVIHTIDHKNDNLFEYGLNYQNLTTFDKAIPNSELVKPGDAPDACLRVTGPND PNMNGRCQRNGATANVIGVYAQANYTLHPMVTLGAGTRYDVYTLMDKDWQLHVTQGFSPSAALNVSPLEDLNFRLSYAYV TRGPMPGGLVWMRQDNLRYNRNLKPEIGQNVEFNTEYGSKYFDFRAAGFVQLISNYINQFSSTLFVTNLPPKDIIYVPGY EVSGTAKYKGFSLGLSVARSWPSLRKHLIADVYELAATVGNVFILTASYTVPRIGLSITWLSRFVTDLDYCSYSPYRNGP TDIDRRPSNCPKTPGIFHVHKPGYGVSSFFITYKPTYKKLEGLSLNAVFNNVFNKQYIDQASPVMSPDEPNQDKYARGMA EPGFNARFEIAYKF
Sequences:
>Translated_814_residues MNDKRFRKYCSFSIFLSLLGMFEAEAKEEKEERKTERKKDKKENTQHTLGKVTTQAVKIFNYNNQTTISSKELERRQANQ ISDMFRRNPNINVGGGAVMAQKIYVRGIEDRLTRVTVDGAAQMGASYGHQGNTIIDPGMLKSVVVTKGAAQASAGPMALI GAIKMETKSANDFIPRGKDYAMSGAATFLTNFGDRETVMGAYRNNHFDVLLYYTHQNIFYYRDGDNATKDLFKPKESNKV SGSPSEQNNVMAKINGYLSERDILTLSYNMTRDNANRPLRANFTGTFLPYSCGDFNAFPNEKNPSDCLFENDASLFKTYS VNLVHNVSLNYEREGGSRFGDPKLKINGYTSIRNVKIDPLFRSTDIATIISFTPNPQLSQGEENRCVAQGGIYDAIKQTC AITFKSLGGGSVVANKDLFIINSGFNANVIHTIDHKNDNLFEYGLNYQNLTTFDKAIPNSELVKPGDAPDACLRVTGPND PNMNGRCQRNGATANVIGVYAQANYTLHPMVTLGAGTRYDVYTLMDKDWQLHVTQGFSPSAALNVSPLEDLNFRLSYAYV TRGPMPGGLVWMRQDNLRYNRNLKPEIGQNVEFNTEYGSKYFDFRAAGFVQLISNYINQFSSTLFVTNLPPKDIIYVPGY EVSGTAKYKGFSLGLSVARSWPSLRKHLIADVYELAATVGNVFILTASYTVPRIGLSITWLSRFVTDLDYCSYSPYRNGP TDIDRRPSNCPKTPGIFHVHKPGYGVSSFFITYKPTYKKLEGLSLNAVFNNVFNKQYIDQASPVMSPDEPNQDKYARGMA EPGFNARFEIAYKF >Mature_814_residues MNDKRFRKYCSFSIFLSLLGMFEAEAKEEKEERKTERKKDKKENTQHTLGKVTTQAVKIFNYNNQTTISSKELERRQANQ ISDMFRRNPNINVGGGAVMAQKIYVRGIEDRLTRVTVDGAAQMGASYGHQGNTIIDPGMLKSVVVTKGAAQASAGPMALI GAIKMETKSANDFIPRGKDYAMSGAATFLTNFGDRETVMGAYRNNHFDVLLYYTHQNIFYYRDGDNATKDLFKPKESNKV SGSPSEQNNVMAKINGYLSERDILTLSYNMTRDNANRPLRANFTGTFLPYSCGDFNAFPNEKNPSDCLFENDASLFKTYS VNLVHNVSLNYEREGGSRFGDPKLKINGYTSIRNVKIDPLFRSTDIATIISFTPNPQLSQGEENRCVAQGGIYDAIKQTC AITFKSLGGGSVVANKDLFIINSGFNANVIHTIDHKNDNLFEYGLNYQNLTTFDKAIPNSELVKPGDAPDACLRVTGPND PNMNGRCQRNGATANVIGVYAQANYTLHPMVTLGAGTRYDVYTLMDKDWQLHVTQGFSPSAALNVSPLEDLNFRLSYAYV TRGPMPGGLVWMRQDNLRYNRNLKPEIGQNVEFNTEYGSKYFDFRAAGFVQLISNYINQFSSTLFVTNLPPKDIIYVPGY EVSGTAKYKGFSLGLSVARSWPSLRKHLIADVYELAATVGNVFILTASYTVPRIGLSITWLSRFVTDLDYCSYSPYRNGP TDIDRRPSNCPKTPGIFHVHKPGYGVSSFFITYKPTYKKLEGLSLNAVFNNVFNKQYIDQASPVMSPDEPNQDKYARGMA EPGFNARFEIAYKF
Specific function: Heme transporter playing an important role in stationary-phase iron acquisition and required for maintenance of chronic infection in mice [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 91058; Mature: 91058
Theoretical pI: Translated: 9.18; Mature: 9.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDKRFRKYCSFSIFLSLLGMFEAEAKEEKEERKTERKKDKKENTQHTLGKVTTQAVKIF CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE NYNNQTTISSKELERRQANQISDMFRRNPNINVGGGAVMAQKIYVRGIEDRLTRVTVDGA ECCCCCEECHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEHHHHEECCCHHHEEEEECCH AQMGASYGHQGNTIIDPGMLKSVVVTKGAAQASAGPMALIGAIKMETKSANDFIPRGKDY HHHCCCCCCCCCEEECCHHHHHHHEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCC AMSGAATFLTNFGDRETVMGAYRNNHFDVLLYYTHQNIFYYRDGDNATKDLFKPKESNKV CCCCHHHHHHCCCCCHHHHHHHCCCCEEEEEEEEECEEEEEECCCCCHHHHCCCCCCCCC SGSPSEQNNVMAKINGYLSERDILTLSYNMTRDNANRPLRANFTGTFLPYSCGDFNAFPN CCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCEEECCCEEECCCCCCCCCCCCC EKNPSDCLFENDASLFKTYSVNLVHNVSLNYEREGGSRFGDPKLKINGYTSIRNVKIDPL CCCCCCCEECCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCEEEEECCEEEEEEEECCC FRSTDIATIISFTPNPQLSQGEENRCVAQGGIYDAIKQTCAITFKSLGGGSVVANKDLFI CCCCCEEEEEEECCCCCCCCCCCCCEEECCCHHHHHHHHHHEEEECCCCCEEEECCCEEE INSGFNANVIHTIDHKNDNLFEYGLNYQNLTTFDKAIPNSELVKPGDAPDACLRVTGPND EECCCCCCEEEEEECCCCCEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEEECCCC PNMNGRCQRNGATANVIGVYAQANYTLHPMVTLGAGTRYDVYTLMDKDWQLHVTQGFSPS CCCCCEEECCCCEEEEEEEEEECCEEEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCC AALNVSPLEDLNFRLSYAYVTRGPMPGGLVWMRQDNLRYNRNLKPEIGQNVEFNTEYGSK CEEECCCCCCCCEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCE YFDFRAAGFVQLISNYINQFSSTLFVTNLPPKDIIYVPGYEVSGTAKYKGFSLGLSVARS EEEHHHHHHHHHHHHHHHHHCCEEEEECCCCCCEEEECCEEECCCEEECCEEHHHHHHHC WPSLRKHLIADVYELAATVGNVFILTASYTVPRIGLSITWLSRFVTDLDYCSYSPYRNGP CHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCC TDIDRRPSNCPKTPGIFHVHKPGYGVSSFFITYKPTYKKLEGLSLNAVFNNVFNKQYIDQ CCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHH ASPVMSPDEPNQDKYARGMAEPGFNARFEIAYKF CCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEEEC >Mature Secondary Structure MNDKRFRKYCSFSIFLSLLGMFEAEAKEEKEERKTERKKDKKENTQHTLGKVTTQAVKIF CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE NYNNQTTISSKELERRQANQISDMFRRNPNINVGGGAVMAQKIYVRGIEDRLTRVTVDGA ECCCCCEECHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEHHHHEECCCHHHEEEEECCH AQMGASYGHQGNTIIDPGMLKSVVVTKGAAQASAGPMALIGAIKMETKSANDFIPRGKDY HHHCCCCCCCCCEEECCHHHHHHHEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCC AMSGAATFLTNFGDRETVMGAYRNNHFDVLLYYTHQNIFYYRDGDNATKDLFKPKESNKV CCCCHHHHHHCCCCCHHHHHHHCCCCEEEEEEEEECEEEEEECCCCCHHHHCCCCCCCCC SGSPSEQNNVMAKINGYLSERDILTLSYNMTRDNANRPLRANFTGTFLPYSCGDFNAFPN CCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCEEECCCEEECCCCCCCCCCCCC EKNPSDCLFENDASLFKTYSVNLVHNVSLNYEREGGSRFGDPKLKINGYTSIRNVKIDPL CCCCCCCEECCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCEEEEECCEEEEEEEECCC FRSTDIATIISFTPNPQLSQGEENRCVAQGGIYDAIKQTCAITFKSLGGGSVVANKDLFI CCCCCEEEEEEECCCCCCCCCCCCCEEECCCHHHHHHHHHHEEEECCCCCEEEECCCEEE INSGFNANVIHTIDHKNDNLFEYGLNYQNLTTFDKAIPNSELVKPGDAPDACLRVTGPND EECCCCCCEEEEEECCCCCEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEEECCCC PNMNGRCQRNGATANVIGVYAQANYTLHPMVTLGAGTRYDVYTLMDKDWQLHVTQGFSPS CCCCCEEECCCCEEEEEEEEEECCEEEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCC AALNVSPLEDLNFRLSYAYVTRGPMPGGLVWMRQDNLRYNRNLKPEIGQNVEFNTEYGSK CEEECCCCCCCCEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCE YFDFRAAGFVQLISNYINQFSSTLFVTNLPPKDIIYVPGYEVSGTAKYKGFSLGLSVARS EEEHHHHHHHHHHHHHHHHHCCEEEEECCCCCCEEEECCEEECCCEEECCEEHHHHHHHC WPSLRKHLIADVYELAATVGNVFILTASYTVPRIGLSITWLSRFVTDLDYCSYSPYRNGP CHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCC TDIDRRPSNCPKTPGIFHVHKPGYGVSSFFITYKPTYKKLEGLSLNAVFNNVFNKQYIDQ CCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHH ASPVMSPDEPNQDKYARGMAEPGFNARFEIAYKF CCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA