Click here to switch to the map view.

The map label for this gene is yeaV [H]

Identifier: 162139437

GI number: 162139437

Start: 2364300

End: 2365781

Strand: Reverse

Name: yeaV [H]

Synonym: YPN_2089

Alternate gene names: 162139437

Gene position: 2365781-2364300 (Counterclockwise)

Preceding gene: 108812252

Following gene: 108812250

Centisome position: 52.17

GC content: 49.06

Gene sequence:

>1482_bases
GTGCTGCTTGGCTTAATATTGGTACTTTATATCGCGGTGAGCAAATACGGCAATATTCGTCTGGGTGAGGGAAAGCCTGA
GTATCGTACTATCCCATGGTTGTTTATGTTTATTTGCGCGGGACTTGGTTCATCAACCCTGTATTGGGGGGTGATGGAGT
GGGCTTATTACTATCAGACACCGGGTCTGAATATTGCGCCAAAAACGCCGAAGGCACTGGAATACAGCGTCAGTTACTCC
TTCTTTCATTGGGGGATCAGTGCGTGGGCAACTTATGCGTTGGCCTCGCTGATTATGGCTTACCATTTTCATGTCAGAAA
AAACAAAGGGTTAAGTTTATCGGGGATTATCTCGGCCATTACCGGGGTCAACCCGCAGGGTTTTTGGGGGCGTCTGGTCG
ATCTGATCTTTTTAATCGCGACAATAGGGGCGCTGACGATCTCATTAGTGATCACCGCCGCCACATTTACCCGTGGACTG
ACTGCGCTTATCGGCGTGCCTAATAACTTTGCGGTGCAGGCTGGCGTGATGTTGGTAGCGGCAGTTATCTTTTCCTTTAG
TTCGTATATCGGTATTGATCATGGTATGCAGCGCCTGAGCAAAATGGTGGGATGGGGCGCTTTTGGTTTTGCCGTTCTGG
TGCTTTTAGTGGGGCCAACTGAATTCATTATCAATAACACCATTAACTCCATCGGATTAACCACACAAAATTTCCTGCAA
ATGAGCCTGTTCACCGACCCTATGGGGGATGGCCGCTTTACCCGCAGTTGGACGGTCTTTTATTGGTTATGGTGGATTTC
ATATACCCCCGGTGTTGCGATGTTTGTGACGCGGGTTTCACGTGGTCGCAAACTCAAAGAGGTTATATGGGCTTTGCTGC
TGGGCAGTTCGTTGGGTTGCTGGTTCTTCTTTGGGGTACTGGAAAGCTACGCGATACAACAGTTTATTAGTGGTGCGTTA
GATGTTCCCCTCATCCTAAATACTCAGGGCGGGGAAACTGCGGTACAAATGCTGCTCAGCGCGCTACCCATGGGCAAATT
ATTCCTTGCTGCCTATCTGTTCATCATGATTATTTTCCTGGCTTCACATATGGATGCGGTGGCGTACTGTATGGCGGCAA
CCAGCACCCGTAATCTGCGGGAAGGCGAAGATCCTAATCGTATGCTGCGGCTGTTTTGGTGTGTAGTGATTACACTGATC
CCTCTCTCCATTCTGTTTGCTGGTGCCTCGTTGGATACCATGAAAACGACGGTTGTACTCACTGCGCTGCCTTTTTTATT
GATTCTCTTGATCGAGGTTTATGGCTTTGTCCGCTGGATTAAGCAGGATTATGCCCATGTTCCCGCGCACCTTATTGAGC
AAAGTACCCCGCAAGTCATGTTGCCGGCTGAATCTTTACCGCCTGCTACTGCGTCAATGTTAGTCGTGGAAACTTTAGTC
GTGGAAACTGCGGCGCCACCCGCCAGTAAGCATAACCAGTAA

Upstream 100 bases:

>100_bases
TGCTTTGGCATTCAGCTTATTTCCGCAGCAAAGCAGCCAAATGGCAGAGACCATTTTTAGTGGCGTTACCCGGCTACTGG
GATCGACGATCCAAATATTA

Downstream 100 bases:

>100_bases
GCATAAATAGCAGGCTCTGTTTTTACGTTTCTATGTCGTTGTATGCCGTGTCGGTATTCCCTAAATGTATGACTAAAAAT
TTTACCTATAACACCAAGAT

Product: putative transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 493; Mature: 493

Protein sequence:

>493_residues
MLLGLILVLYIAVSKYGNIRLGEGKPEYRTIPWLFMFICAGLGSSTLYWGVMEWAYYYQTPGLNIAPKTPKALEYSVSYS
FFHWGISAWATYALASLIMAYHFHVRKNKGLSLSGIISAITGVNPQGFWGRLVDLIFLIATIGALTISLVITAATFTRGL
TALIGVPNNFAVQAGVMLVAAVIFSFSSYIGIDHGMQRLSKMVGWGAFGFAVLVLLVGPTEFIINNTINSIGLTTQNFLQ
MSLFTDPMGDGRFTRSWTVFYWLWWISYTPGVAMFVTRVSRGRKLKEVIWALLLGSSLGCWFFFGVLESYAIQQFISGAL
DVPLILNTQGGETAVQMLLSALPMGKLFLAAYLFIMIIFLASHMDAVAYCMAATSTRNLREGEDPNRMLRLFWCVVITLI
PLSILFAGASLDTMKTTVVLTALPFLLILLIEVYGFVRWIKQDYAHVPAHLIEQSTPQVMLPAESLPPATASMLVVETLV
VETAAPPASKHNQ

Sequences:

>Translated_493_residues
MLLGLILVLYIAVSKYGNIRLGEGKPEYRTIPWLFMFICAGLGSSTLYWGVMEWAYYYQTPGLNIAPKTPKALEYSVSYS
FFHWGISAWATYALASLIMAYHFHVRKNKGLSLSGIISAITGVNPQGFWGRLVDLIFLIATIGALTISLVITAATFTRGL
TALIGVPNNFAVQAGVMLVAAVIFSFSSYIGIDHGMQRLSKMVGWGAFGFAVLVLLVGPTEFIINNTINSIGLTTQNFLQ
MSLFTDPMGDGRFTRSWTVFYWLWWISYTPGVAMFVTRVSRGRKLKEVIWALLLGSSLGCWFFFGVLESYAIQQFISGAL
DVPLILNTQGGETAVQMLLSALPMGKLFLAAYLFIMIIFLASHMDAVAYCMAATSTRNLREGEDPNRMLRLFWCVVITLI
PLSILFAGASLDTMKTTVVLTALPFLLILLIEVYGFVRWIKQDYAHVPAHLIEQSTPQVMLPAESLPPATASMLVVETLV
VETAAPPASKHNQ
>Mature_493_residues
MLLGLILVLYIAVSKYGNIRLGEGKPEYRTIPWLFMFICAGLGSSTLYWGVMEWAYYYQTPGLNIAPKTPKALEYSVSYS
FFHWGISAWATYALASLIMAYHFHVRKNKGLSLSGIISAITGVNPQGFWGRLVDLIFLIATIGALTISLVITAATFTRGL
TALIGVPNNFAVQAGVMLVAAVIFSFSSYIGIDHGMQRLSKMVGWGAFGFAVLVLLVGPTEFIINNTINSIGLTTQNFLQ
MSLFTDPMGDGRFTRSWTVFYWLWWISYTPGVAMFVTRVSRGRKLKEVIWALLLGSSLGCWFFFGVLESYAIQQFISGAL
DVPLILNTQGGETAVQMLLSALPMGKLFLAAYLFIMIIFLASHMDAVAYCMAATSTRNLREGEDPNRMLRLFWCVVITLI
PLSILFAGASLDTMKTTVVLTALPFLLILLIEVYGFVRWIKQDYAHVPAHLIEQSTPQVMLPAESLPPATASMLVVETLV
VETAAPPASKHNQ

Specific function: Unknown

COG id: COG1292

COG function: function code M; Choline-glycine betaine transporter

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BCCT transporter (TC 2.A.15) family [H]

Homologues:

Organism=Escherichia coli, GI1788102, Length=466, Percent_Identity=78.3261802575107, Blast_Score=755, Evalue=0.0,
Organism=Escherichia coli, GI1786224, Length=439, Percent_Identity=27.3348519362187, Blast_Score=219, Evalue=2e-58,
Organism=Escherichia coli, GI1786506, Length=464, Percent_Identity=26.0775862068966, Blast_Score=169, Evalue=3e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000060
- InterPro:   IPR018093 [H]

Pfam domain/function: PF02028 BCCT [H]

EC number: NA

Molecular weight: Translated: 54424; Mature: 54424

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: PS00888 CNMP_BINDING_1 ; PS01303 BCCT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLGLILVLYIAVSKYGNIRLGEGKPEYRTIPWLFMFICAGLGSSTLYWGVMEWAYYYQT
CHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEC
PGLNIAPKTPKALEYSVSYSFFHWGISAWATYALASLIMAYHFHVRKNKGLSLSGIISAI
CCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
TGVNPQGFWGRLVDLIFLIATIGALTISLVITAATFTRGLTALIGVPNNFAVQAGVMLVA
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHH
AVIFSFSSYIGIDHGMQRLSKMVGWGAFGFAVLVLLVGPTEFIINNTINSIGLTTQNFLQ
HHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHCCHHHCCCCHHHHHH
MSLFTDPMGDGRFTRSWTVFYWLWWISYTPGVAMFVTRVSRGRKLKEVIWALLLGSSLGC
HHHHCCCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHCCCHHH
WFFFGVLESYAIQQFISGALDVPLILNTQGGETAVQMLLSALPMGKLFLAAYLFIMIIFL
HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
ASHMDAVAYCMAATSTRNLREGEDPNRMLRLFWCVVITLIPLSILFAGASLDTMKTTVVL
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
TALPFLLILLIEVYGFVRWIKQDYAHVPAHLIEQSTPQVMLPAESLPPATASMLVVETLV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHH
VETAAPPASKHNQ
HHCCCCCCCCCCC
>Mature Secondary Structure
MLLGLILVLYIAVSKYGNIRLGEGKPEYRTIPWLFMFICAGLGSSTLYWGVMEWAYYYQT
CHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEC
PGLNIAPKTPKALEYSVSYSFFHWGISAWATYALASLIMAYHFHVRKNKGLSLSGIISAI
CCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
TGVNPQGFWGRLVDLIFLIATIGALTISLVITAATFTRGLTALIGVPNNFAVQAGVMLVA
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHH
AVIFSFSSYIGIDHGMQRLSKMVGWGAFGFAVLVLLVGPTEFIINNTINSIGLTTQNFLQ
HHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHCCHHHCCCCHHHHHH
MSLFTDPMGDGRFTRSWTVFYWLWWISYTPGVAMFVTRVSRGRKLKEVIWALLLGSSLGC
HHHHCCCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHCCCHHH
WFFFGVLESYAIQQFISGALDVPLILNTQGGETAVQMLLSALPMGKLFLAAYLFIMIIFL
HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
ASHMDAVAYCMAATSTRNLREGEDPNRMLRLFWCVVITLIPLSILFAGASLDTMKTTVVL
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
TALPFLLILLIEVYGFVRWIKQDYAHVPAHLIEQSTPQVMLPAESLPPATASMLVVETLV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHH
VETAAPPASKHNQ
HHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]