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The map label for this gene is rbsC [H]

Identifier: 108812470

GI number: 108812470

Start: 2588480

End: 2589502

Strand: Reverse

Name: rbsC [H]

Synonym: YPN_2309

Alternate gene names: 108812470

Gene position: 2589502-2588480 (Counterclockwise)

Preceding gene: 108812471

Following gene: 108812469

Centisome position: 57.11

GC content: 51.42

Gene sequence:

>1023_bases
ATGGTTATTGATCTCCCCGCTCACTCGAAGCCATCACGCTCATTCAACGCCATCATCGCATGGTGCCTACAGCGGCCGTC
GACCTTTACCTTTATGTTGATCGTTATCGTGTGTGTCACCGTCGGTGCTATTAATCCTGCTTTTTTACAACTCTCCAATC
TGTTTGATATTGCGAGAGCCTCGGTCGTGGTGGGTCTGTTTGCATTGGGCGTCTTGATTGTACTCGCCTCCGGTGGCCTG
GATGTCTCGTTTACGGCGATTGCGGCACTGTGCATGTACGCCGTCACGAAGTTTGTCTTGTGGTATTGGCCTGATGCCCC
GGTTATCGCCATGTTTATTGCCAGTGCCTGTGGGGGGGCCATCTTGGGAGGGATTAACGGTGTTTTGGTCCACAGCCTAA
AAACCTCATCGCTTATTGTGACTATTGGCACCCAATACCTGTATCGGGGGGGGCTACTAACGTTTATTGGCACGGCGTTA
TACATGAATATTCCCGAGCAATTAGAGCAATTTGGTAAAAGCCCGCTCTATACCGTCAGCAATATCAATCAAGGCATCAC
GATACTGCCGCTGTTCTTTTTAATACTGGTGTTTGCCAGCTTACTGACCTGGTGGTTACTGAACCGCACCTTGCTGGGCC
GGGCCATTTTTGCCATTGGTGGTAATAGCGATATTGCCCAACGGCTCGGTTTTGATGTGCGCGGGGTACAGATCTTTGTA
TTTACCTACGCCGGGTTGCTGGCGGGGATCGCGGGCATGGTGCATGTAGCCAGTAACCGCATCGCTAACCCGTTTGATTT
AAATGGTCTGGAGTTAACGGTCATTGCTGCTGTCATTCTCGGGGGCGCACGTATTACCGGCGGCAGTGGTACGGTTTTGG
GCACCCTCATGGGGGTGGTCTTGGTGGTGTTGGTGAACAACGTTTTAATTCTGGTGGGTATTCCAAGTACATGGCAGAAG
GTGATTATCGGGGCGTTTATTATCGCCGCCGGTAGCGCCTTTGGTTGGCGTAAGTATCGCTAA

Upstream 100 bases:

>100_bases
AAGGCCGTATTTGCCAACAGGTGAGCGCAGTGGATGCCAATGAAAATAGACTCTATCAAGCACAGATCGCCGATGAGGGA
CTCACTGAGGATTTATAGCT

Downstream 100 bases:

>100_bases
GGCCGATTTCAGCATTTATGTTTAATCAATGATGATGAGGATATCAATATGTCAAAAATTGTCAGCCTGGGGATTCATGT
TCTTGATGTATTAGGACGTC

Product: sugar ABC transporter, permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MVIDLPAHSKPSRSFNAIIAWCLQRPSTFTFMLIVIVCVTVGAINPAFLQLSNLFDIARASVVVGLFALGVLIVLASGGL
DVSFTAIAALCMYAVTKFVLWYWPDAPVIAMFIASACGGAILGGINGVLVHSLKTSSLIVTIGTQYLYRGGLLTFIGTAL
YMNIPEQLEQFGKSPLYTVSNINQGITILPLFFLILVFASLLTWWLLNRTLLGRAIFAIGGNSDIAQRLGFDVRGVQIFV
FTYAGLLAGIAGMVHVASNRIANPFDLNGLELTVIAAVILGGARITGGSGTVLGTLMGVVLVVLVNNVLILVGIPSTWQK
VIIGAFIIAAGSAFGWRKYR

Sequences:

>Translated_340_residues
MVIDLPAHSKPSRSFNAIIAWCLQRPSTFTFMLIVIVCVTVGAINPAFLQLSNLFDIARASVVVGLFALGVLIVLASGGL
DVSFTAIAALCMYAVTKFVLWYWPDAPVIAMFIASACGGAILGGINGVLVHSLKTSSLIVTIGTQYLYRGGLLTFIGTAL
YMNIPEQLEQFGKSPLYTVSNINQGITILPLFFLILVFASLLTWWLLNRTLLGRAIFAIGGNSDIAQRLGFDVRGVQIFV
FTYAGLLAGIAGMVHVASNRIANPFDLNGLELTVIAAVILGGARITGGSGTVLGTLMGVVLVVLVNNVLILVGIPSTWQK
VIIGAFIIAAGSAFGWRKYR
>Mature_340_residues
MVIDLPAHSKPSRSFNAIIAWCLQRPSTFTFMLIVIVCVTVGAINPAFLQLSNLFDIARASVVVGLFALGVLIVLASGGL
DVSFTAIAALCMYAVTKFVLWYWPDAPVIAMFIASACGGAILGGINGVLVHSLKTSSLIVTIGTQYLYRGGLLTFIGTAL
YMNIPEQLEQFGKSPLYTVSNINQGITILPLFFLILVFASLLTWWLLNRTLLGRAIFAIGGNSDIAQRLGFDVRGVQIFV
FTYAGLLAGIAGMVHVASNRIANPFDLNGLELTVIAAVILGGARITGGSGTVLGTLMGVVLVVLVNNVLILVGIPSTWQK
VIIGAFIIAAGSAFGWRKYR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=291, Percent_Identity=32.9896907216495, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI1790191, Length=316, Percent_Identity=29.4303797468354, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1790524, Length=331, Percent_Identity=31.1178247734139, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1787794, Length=296, Percent_Identity=30.0675675675676, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI1787793, Length=288, Percent_Identity=30.2083333333333, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1789992, Length=347, Percent_Identity=25.6484149855908, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI87082395, Length=284, Percent_Identity=28.5211267605634, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI145693152, Length=294, Percent_Identity=28.5714285714286, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI145693214, Length=334, Percent_Identity=30.2395209580838, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 36170; Mature: 36170

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIDLPAHSKPSRSFNAIIAWCLQRPSTFTFMLIVIVCVTVGAINPAFLQLSNLFDIARA
CEEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
SVVVGLFALGVLIVLASGGLDVSFTAIAALCMYAVTKFVLWYWPDAPVIAMFIASACGGA
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCH
ILGGINGVLVHSLKTSSLIVTIGTQYLYRGGLLTFIGTALYMNIPEQLEQFGKSPLYTVS
HHHCCCHHHHEEECCCEEEEEECHHHHHHCCHHHHHHHHHHHCCHHHHHHHCCCCCEEEC
NINQGITILPLFFLILVFASLLTWWLLNRTLLGRAIFAIGGNSDIAQRLGFDVRGVQIFV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHCCCCCCHHHHHH
FTYAGLLAGIAGMVHVASNRIANPFDLNGLELTVIAAVILGGARITGGSGTVLGTLMGVV
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEECCCCHHHHHHHHHH
LVVLVNNVLILVGIPSTWQKVIIGAFIIAAGSAFGWRKYR
HHHHHCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MVIDLPAHSKPSRSFNAIIAWCLQRPSTFTFMLIVIVCVTVGAINPAFLQLSNLFDIARA
CEEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
SVVVGLFALGVLIVLASGGLDVSFTAIAALCMYAVTKFVLWYWPDAPVIAMFIASACGGA
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCH
ILGGINGVLVHSLKTSSLIVTIGTQYLYRGGLLTFIGTALYMNIPEQLEQFGKSPLYTVS
HHHCCCHHHHEEECCCEEEEEECHHHHHHCCHHHHHHHHHHHCCHHHHHHHCCCCCEEEC
NINQGITILPLFFLILVFASLLTWWLLNRTLLGRAIFAIGGNSDIAQRLGFDVRGVQIFV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHCCCCCCHHHHHH
FTYAGLLAGIAGMVHVASNRIANPFDLNGLELTVIAAVILGGARITGGSGTVLGTLMGVV
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEECCCCHHHHHHHHHH
LVVLVNNVLILVGIPSTWQKVIIGAFIIAAGSAFGWRKYR
HHHHHCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]