Click here to switch to the map view.

The map label for this gene is ydjH [H]

Identifier: 108812469

GI number: 108812469

Start: 2587472

End: 2588431

Strand: Reverse

Name: ydjH [H]

Synonym: YPN_2308

Alternate gene names: 108812469

Gene position: 2588431-2587472 (Counterclockwise)

Preceding gene: 108812470

Following gene: 108812453

Centisome position: 57.08

GC content: 52.4

Gene sequence:

>960_bases
ATGTCAAAAATTGTCAGCCTGGGGATTCATGTTCTTGATGTATTAGGACGTCACGTGAACCGATTCCCCCCCGGTGGAGA
GCTCGATATTATTAATGAAATCCGCTTAACCGTTGCGGGTACAGCGGCTGGGATGAGTGTTGATCTGGCTAAGCTCGGCG
GCGATGTTTATGCGATGGGGGCCGTGGGTCTGGATGAATCGGGCAACTTTATTATCGACACCTTGCGGCGCTATGGGGGT
AATACCGACCACATTGTACGTAAATCAGAGGTACAAACCTCTTGCAGTATGCTGCCCATCAGACCCAATGGCGAGCGGCC
GGTTCTGCATGTTTTGGGGGCCAACGCGACCTATAGGCTTGAAGATATCCATTGGGATGTGATTGCCAGTGCGGATATTC
TCCACTTCGGTGGCACTTATTTACTGCCCGGCCTTGATGGGCCACCCACGGCCACTATCTTAAAATTTGCCAAAGAGCAT
GGGGTGACTACCACGCTGGATTTACTGGTTAACGCCCAACCTGACCTGCTGGCCAAACTGGAGCCCGCGTTGCCTTATAT
CGATTATTTTATGCCCGGCTTAGATGAGGCGCGGGCCATTTGCGGTTTAGAGAAACGTGCTGATGTCATTGCGTTTTTCC
TGAACCGCGGGGTGGGCCACACCGTTTTCAAAATGGGGGCTGAGGGGAGCAGTATTGCGTCATTGGAAATGGCGGAGATT
CTGATCCCCGCGTATAAAGCGCAGGTTGTGGATTCAACCGGCTGCGGTGATTCCTATTGTGCGGCCTTTATTATGGGGTT
AACCAAAGGCTGGGATCTGGCGACATCGGGGCGCTTCGCTTCTGCTGCGGCCTCGCTGGTGGTCTCTGGTTTAGGCTCTG
ATGCGGGGATTATTGATTTTGAGCATACCCTTAAGGTGATGAATACGGCCGAAACCTTACCCATTGCCCAAGAGACTTAA

Upstream 100 bases:

>100_bases
GGCGTTTATTATCGCCGCCGGTAGCGCCTTTGGTTGGCGTAAGTATCGCTAAGGCCGATTTCAGCATTTATGTTTAATCA
ATGATGATGAGGATATCAAT

Downstream 100 bases:

>100_bases
CCCTCGGATCCCAATGATGGTCTATCGTTCGGGTCATTGGGATAGCTCGGGTTATTGGACTGGATACAGTTGTCACATAA
TCTTTGGTGATCTTCTAGGC

Product: sugar kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MSKIVSLGIHVLDVLGRHVNRFPPGGELDIINEIRLTVAGTAAGMSVDLAKLGGDVYAMGAVGLDESGNFIIDTLRRYGG
NTDHIVRKSEVQTSCSMLPIRPNGERPVLHVLGANATYRLEDIHWDVIASADILHFGGTYLLPGLDGPPTATILKFAKEH
GVTTTLDLLVNAQPDLLAKLEPALPYIDYFMPGLDEARAICGLEKRADVIAFFLNRGVGHTVFKMGAEGSSIASLEMAEI
LIPAYKAQVVDSTGCGDSYCAAFIMGLTKGWDLATSGRFASAAASLVVSGLGSDAGIIDFEHTLKVMNTAETLPIAQET

Sequences:

>Translated_319_residues
MSKIVSLGIHVLDVLGRHVNRFPPGGELDIINEIRLTVAGTAAGMSVDLAKLGGDVYAMGAVGLDESGNFIIDTLRRYGG
NTDHIVRKSEVQTSCSMLPIRPNGERPVLHVLGANATYRLEDIHWDVIASADILHFGGTYLLPGLDGPPTATILKFAKEH
GVTTTLDLLVNAQPDLLAKLEPALPYIDYFMPGLDEARAICGLEKRADVIAFFLNRGVGHTVFKMGAEGSSIASLEMAEI
LIPAYKAQVVDSTGCGDSYCAAFIMGLTKGWDLATSGRFASAAASLVVSGLGSDAGIIDFEHTLKVMNTAETLPIAQET
>Mature_318_residues
SKIVSLGIHVLDVLGRHVNRFPPGGELDIINEIRLTVAGTAAGMSVDLAKLGGDVYAMGAVGLDESGNFIIDTLRRYGGN
TDHIVRKSEVQTSCSMLPIRPNGERPVLHVLGANATYRLEDIHWDVIASADILHFGGTYLLPGLDGPPTATILKFAKEHG
VTTTLDLLVNAQPDLLAKLEPALPYIDYFMPGLDEARAICGLEKRADVIAFFLNRGVGHTVFKMGAEGSSIASLEMAEIL
IPAYKAQVVDSTGCGDSYCAAFIMGLTKGWDLATSGRFASAAASLVVSGLGSDAGIIDFEHTLKVMNTAETLPIAQET

Specific function: Unknown

COG id: COG0524

COG function: function code G; Sugar kinases, ribokinase family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carbohydrate kinase pfkB family [H]

Homologues:

Organism=Homo sapiens, GI11545855, Length=255, Percent_Identity=26.6666666666667, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI87081971, Length=269, Percent_Identity=26.7657992565056, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI87082343, Length=316, Percent_Identity=29.4303797468354, Blast_Score=84, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17532905, Length=303, Percent_Identity=27.7227722772277, Blast_Score=75, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6322565, Length=284, Percent_Identity=26.056338028169, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011611
- InterPro:   IPR002173
- InterPro:   IPR002139 [H]

Pfam domain/function: PF00294 PfkB [H]

EC number: NA

Molecular weight: Translated: 33867; Mature: 33736

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKIVSLGIHVLDVLGRHVNRFPPGGELDIINEIRLTVAGTAAGMSVDLAKLGGDVYAMG
CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEECCCCCEEEHHHHCCCEEEEE
AVGLDESGNFIIDTLRRYGGNTDHIVRKSEVQTSCSMLPIRPNGERPVLHVLGANATYRL
EECCCCCCCHHHHHHHHHCCCCCCEEEHHHHHCCCCEEEECCCCCCCEEEEECCCCEEEE
EDIHWDVIASADILHFGGTYLLPGLDGPPTATILKFAKEHGVTTTLDLLVNAQPDLLAKL
EECEEEEEECCCEEECCCEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCHHHHHC
EPALPYIDYFMPGLDEARAICGLEKRADVIAFFLNRGVGHTVFKMGAEGSSIASLEMAEI
CCCCCHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHCCCCHHHEEECCCCCCCHHHHHHHH
LIPAYKAQVVDSTGCGDSYCAAFIMGLTKGWDLATSGRFASAAASLVVSGLGSDAGIIDF
HHHHHHHEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEH
EHTLKVMNTAETLPIAQET
HHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SKIVSLGIHVLDVLGRHVNRFPPGGELDIINEIRLTVAGTAAGMSVDLAKLGGDVYAMG
CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEECCCCCEEEHHHHCCCEEEEE
AVGLDESGNFIIDTLRRYGGNTDHIVRKSEVQTSCSMLPIRPNGERPVLHVLGANATYRL
EECCCCCCCHHHHHHHHHCCCCCCEEEHHHHHCCCCEEEECCCCCCCEEEEECCCCEEEE
EDIHWDVIASADILHFGGTYLLPGLDGPPTATILKFAKEHGVTTTLDLLVNAQPDLLAKL
EECEEEEEECCCEEECCCEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCHHHHHC
EPALPYIDYFMPGLDEARAICGLEKRADVIAFFLNRGVGHTVFKMGAEGSSIASLEMAEI
CCCCCHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHCCCCHHHEEECCCCCCCHHHHHHHH
LIPAYKAQVVDSTGCGDSYCAAFIMGLTKGWDLATSGRFASAAASLVVSGLGSDAGIIDF
HHHHHHHEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEH
EHTLKVMNTAETLPIAQET
HHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]