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The map label for this gene is ompA [H]

Identifier: 108812385

GI number: 108812385

Start: 2513745

End: 2514581

Strand: Reverse

Name: ompA [H]

Synonym: YPN_2224

Alternate gene names: 108812385

Gene position: 2514581-2513745 (Counterclockwise)

Preceding gene: 108812386

Following gene: 108812384

Centisome position: 55.45

GC content: 48.15

Gene sequence:

>837_bases
TTGGGCCGTTGGTGGAGATATAAGTGGATCACTTTTCATCCGTCGTTGACATATGCGGATGGTTTAGAGGTTTTGCTGCG
CATTTTAGGGCTCGGTTTTGAGGGGCGCTACAGCATTATCGAAGATGGTGATCGGCAATTAACTAAAATACGCCAAGGGT
TGCTGACGCTGCTCCAAAGTACCCGAGACACGATCCCACCGGCACTTTCTCCGCATGGGTTGATCGCACATCAAAACAGA
AGACGGCGGGGCATTTTTGTTCCGGTGCGCGTATCCATGCTGTTGTGTGGTTTCCTCATTGTCGCGACCTTTATTGGATG
TAAATACTTTCTCTCGGTACCGGAAAGTGACTTGCTAAAAAGAATGGGAGCATTGCAACGTGTGGTTGTGACGCCACCCG
TTGCCGCACCAAAACTTCGACTGTCTATTTTATTAAAAGATGAGATAGCGAAGCAGTTAGTCAGTGTTGATGAAACGAGC
AACAACAGCAAAGTCATCTTTAAAGGCGACTCTATGTTTATGGTCGGCTCGGATAACGTCAGACCTGAAATGATTGACGT
AATTAAACGCGTCGCGCAGGAAGTGCATCGCGTTAAAGGGGCAATCCTCATCGTCGGGCATACAGACTCTATGCCGATTA
ATAAACCCGGCTTCCCTAATAACCAGGTACTTTCCGAAAAACGCGCGGCCAATGTTGCACGCTATATGGAGCAGGCCGGT
ATTCCAACCGACAAAATTCGGTTTGAGGGCAAGGGGGAAACGCAACCGGTTAGCAGCAATGACGATGCGACAGGACGTTC
GCAAAACCGCCGCGTAGAAATTTTTGTTAATTATTGA

Upstream 100 bases:

>100_bases
ACATGTCGTTCAAATCAAAGGAGAAAGCTATCGACTCAGACAGAAACGAAAGGCCGGGGTTATAGCAGAAGCTAATCCTG
AGTAAAACGGTGGATCAATA

Downstream 100 bases:

>100_bases
GATAACGAATGTCTTATTTGAATCGATTGTTTTCTGGCTGGGCCATGAAACGCATATTGCTGGTCGGCTGCTTTATATTG
CTGGCTGCGGCGATATGGTT

Product: OmpA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MGRWWRYKWITFHPSLTYADGLEVLLRILGLGFEGRYSIIEDGDRQLTKIRQGLLTLLQSTRDTIPPALSPHGLIAHQNR
RRRGIFVPVRVSMLLCGFLIVATFIGCKYFLSVPESDLLKRMGALQRVVVTPPVAAPKLRLSILLKDEIAKQLVSVDETS
NNSKVIFKGDSMFMVGSDNVRPEMIDVIKRVAQEVHRVKGAILIVGHTDSMPINKPGFPNNQVLSEKRAANVARYMEQAG
IPTDKIRFEGKGETQPVSSNDDATGRSQNRRVEIFVNY

Sequences:

>Translated_278_residues
MGRWWRYKWITFHPSLTYADGLEVLLRILGLGFEGRYSIIEDGDRQLTKIRQGLLTLLQSTRDTIPPALSPHGLIAHQNR
RRRGIFVPVRVSMLLCGFLIVATFIGCKYFLSVPESDLLKRMGALQRVVVTPPVAAPKLRLSILLKDEIAKQLVSVDETS
NNSKVIFKGDSMFMVGSDNVRPEMIDVIKRVAQEVHRVKGAILIVGHTDSMPINKPGFPNNQVLSEKRAANVARYMEQAG
IPTDKIRFEGKGETQPVSSNDDATGRSQNRRVEIFVNY
>Mature_277_residues
GRWWRYKWITFHPSLTYADGLEVLLRILGLGFEGRYSIIEDGDRQLTKIRQGLLTLLQSTRDTIPPALSPHGLIAHQNRR
RRGIFVPVRVSMLLCGFLIVATFIGCKYFLSVPESDLLKRMGALQRVVVTPPVAAPKLRLSILLKDEIAKQLVSVDETSN
NSKVIFKGDSMFMVGSDNVRPEMIDVIKRVAQEVHRVKGAILIVGHTDSMPINKPGFPNNQVLSEKRAANVARYMEQAGI
PTDKIRFEGKGETQPVSSNDDATGRSQNRRVEIFVNY

Specific function: Structural protein that may protect the integrity of the bacterium [H]

COG id: COG1360

COG function: function code N; Flagellar motor protein

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=134, Percent_Identity=31.3432835820896, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 31255; Mature: 31124

Theoretical pI: Translated: 10.45; Mature: 10.45

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRWWRYKWITFHPSLTYADGLEVLLRILGLGFEGRYSIIEDGDRQLTKIRQGLLTLLQS
CCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHH
TRDTIPPALSPHGLIAHQNRRRRGIFVPVRVSMLLCGFLIVATFIGCKYFLSVPESDLLK
HHHCCCCCCCCCCEEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
RMGALQRVVVTPPVAAPKLRLSILLKDEIAKQLVSVDETSNNSKVIFKGDSMFMVGSDNV
HHHHHHEEEECCCCCCCCCEEEEEEHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCC
RPEMIDVIKRVAQEVHRVKGAILIVGHTDSMPINKPGFPNNQVLSEKRAANVARYMEQAG
CHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
IPTDKIRFEGKGETQPVSSNDDATGRSQNRRVEIFVNY
CCHHHEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
>Mature Secondary Structure 
GRWWRYKWITFHPSLTYADGLEVLLRILGLGFEGRYSIIEDGDRQLTKIRQGLLTLLQS
CCEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHH
TRDTIPPALSPHGLIAHQNRRRRGIFVPVRVSMLLCGFLIVATFIGCKYFLSVPESDLLK
HHHCCCCCCCCCCEEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
RMGALQRVVVTPPVAAPKLRLSILLKDEIAKQLVSVDETSNNSKVIFKGDSMFMVGSDNV
HHHHHHEEEECCCCCCCCCEEEEEEHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCC
RPEMIDVIKRVAQEVHRVKGAILIVGHTDSMPINKPGFPNNQVLSEKRAANVARYMEQAG
CHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
IPTDKIRFEGKGETQPVSSNDDATGRSQNRRVEIFVNY
CCHHHEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1447140 [H]