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The map label for this gene is yeaW [H]

Identifier: 108812250

GI number: 108812250

Start: 2363425

End: 2364183

Strand: Reverse

Name: yeaW [H]

Synonym: YPN_2088

Alternate gene names: 108812250

Gene position: 2364183-2363425 (Counterclockwise)

Preceding gene: 162139437

Following gene: 108812249

Centisome position: 52.14

GC content: 47.96

Gene sequence:

>759_bases
ATGAGTAATCAACATCCTGACTTTGTTTTGCCAAAAGACTTTTGTGCAAACCCGCGTGAGGCTTACACCATTCCTGCTTA
TTTCTATACCCAACAGGCGGCCTTCGAGCATGAGAAAGAGAGGGTATTTACTAATAGCTGGATTTGTATGGCGCACGGCA
GTGAAGTGGCGCAGCCTAATGATTACATCACTCGTGAGATTATTGGTGAGAACATCGTTATCGTGCGTGGACGTGATAGC
GTATTGCGGGCTTTTTATAATGTCTGTCCGCATCGTGGGCACCAATTACTCAGTGGGGAAGGTAAAGCAAAGAATGTCAT
TACTTGCCCCTATCATGCCTGGACCTTCAAGCTCGACGGTGAACTGGCACATGCCCGTAACTGCGAGAATGTCACTAATT
TTGATAAAGATCGGGCGACGCTTTTCCCGGTGCGCTTAGAGGAATATGCCGGTTTTATTTTCATCAATATGAACCCAGAC
GCCGAAAGCGTGGAACAACAATTGCCGGGCTTACAGGATAAAGTTTTCGAAGCGTGCCCCGATGTGCACGAGTTGAAATT
GGCCGCTCGCTTCACCACCCGTACCCCTGCTAACTGGAAGAATATTGTCGATAACTATATGGAGTGTTATCACTGCGAGC
CTGCTCACCCAGGATTCGCCGATTCAGTGCAGATTGATCGCTACTGGCACACCATGCACGGTAATTGGTCATTACAATTT
GGCTATGGCCATGCTCAATGTTCAATGTGCCGCCACTGA

Upstream 100 bases:

>100_bases
CTGTTTTTACGTTTCTATGTCGTTGTATGCCGTGTCGGTATTCCCTAAATGTATGACTAAAAATTTTACCTATAACACCA
AGATAGCCAGAGGTGACATT

Downstream 100 bases:

>100_bases
AAGGCATGATGACCGTAATTTATGAGTTCCCAGTCGATGCAGAAACGACGCTGCAAAACTATGATATTTATTTTACGAAC
GAAGAACTGACGGAAGACCA

Product: dioxygenase alpha subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MSNQHPDFVLPKDFCANPREAYTIPAYFYTQQAAFEHEKERVFTNSWICMAHGSEVAQPNDYITREIIGENIVIVRGRDS
VLRAFYNVCPHRGHQLLSGEGKAKNVITCPYHAWTFKLDGELAHARNCENVTNFDKDRATLFPVRLEEYAGFIFINMNPD
AESVEQQLPGLQDKVFEACPDVHELKLAARFTTRTPANWKNIVDNYMECYHCEPAHPGFADSVQIDRYWHTMHGNWSLQF
GYGHAQCSMCRH

Sequences:

>Translated_252_residues
MSNQHPDFVLPKDFCANPREAYTIPAYFYTQQAAFEHEKERVFTNSWICMAHGSEVAQPNDYITREIIGENIVIVRGRDS
VLRAFYNVCPHRGHQLLSGEGKAKNVITCPYHAWTFKLDGELAHARNCENVTNFDKDRATLFPVRLEEYAGFIFINMNPD
AESVEQQLPGLQDKVFEACPDVHELKLAARFTTRTPANWKNIVDNYMECYHCEPAHPGFADSVQIDRYWHTMHGNWSLQF
GYGHAQCSMCRH
>Mature_251_residues
SNQHPDFVLPKDFCANPREAYTIPAYFYTQQAAFEHEKERVFTNSWICMAHGSEVAQPNDYITREIIGENIVIVRGRDSV
LRAFYNVCPHRGHQLLSGEGKAKNVITCPYHAWTFKLDGELAHARNCENVTNFDKDRATLFPVRLEEYAGFIFINMNPDA
ESVEQQLPGLQDKVFEACPDVHELKLAARFTTRTPANWKNIVDNYMECYHCEPAHPGFADSVQIDRYWHTMHGNWSLQFG
YGHAQCSMCRH

Specific function: Unknown

COG id: COG4638

COG function: function code PR; Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

Organism=Escherichia coli, GI1788103, Length=243, Percent_Identity=81.0699588477366, Blast_Score=436, Evalue=1e-123,
Organism=Escherichia coli, GI1788888, Length=149, Percent_Identity=30.2013422818792, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017941
- InterPro:   IPR015881
- InterPro:   IPR001663 [H]

Pfam domain/function: PF00355 Rieske [H]

EC number: 1.14.1.- [C]

Molecular weight: Translated: 29064; Mature: 28933

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: PS00570 RING_HYDROXYL_ALPHA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
4.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNQHPDFVLPKDFCANPREAYTIPAYFYTQQAAFEHEKERVFTNSWICMAHGSEVAQPN
CCCCCCCEECCHHHCCCCCCCEEEEHHEEEHHHHHHHHHHHEECCCEEEEECCCCCCCCC
DYITREIIGENIVIVRGRDSVLRAFYNVCPHRGHQLLSGEGKAKNVITCPYHAWTFKLDG
HHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCEEECCCCCCCCEEECCCEEEEEEECC
ELAHARNCENVTNFDKDRATLFPVRLEEYAGFIFINMNPDAESVEQQLPGLQDKVFEACP
CCCCCCCCCCCCCCCCCCEEEEEEEEHHHCCEEEEEECCCHHHHHHHCCCHHHHHHHHCC
DVHELKLAARFTTRTPANWKNIVDNYMECYHCEPAHPGFADSVQIDRYWHTMHGNWSLQF
CHHHHEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCEEEEE
GYGHAQCSMCRH
CCCCHHHHCCCC
>Mature Secondary Structure 
SNQHPDFVLPKDFCANPREAYTIPAYFYTQQAAFEHEKERVFTNSWICMAHGSEVAQPN
CCCCCCEECCHHHCCCCCCCEEEEHHEEEHHHHHHHHHHHEECCCEEEEECCCCCCCCC
DYITREIIGENIVIVRGRDSVLRAFYNVCPHRGHQLLSGEGKAKNVITCPYHAWTFKLDG
HHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCEEECCCCCCCCEEECCCEEEEEEECC
ELAHARNCENVTNFDKDRATLFPVRLEEYAGFIFINMNPDAESVEQQLPGLQDKVFEACP
CCCCCCCCCCCCCCCCCCEEEEEEEEHHHCCEEEEEECCCHHHHHHHCCCHHHHHHHHCC
DVHELKLAARFTTRTPANWKNIVDNYMECYHCEPAHPGFADSVQIDRYWHTMHGNWSLQF
CHHHHEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCEEEEE
GYGHAQCSMCRH
CCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]