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The map label for this gene is intD [C]

Identifier: 108811188

GI number: 108811188

Start: 1181239

End: 1181385

Strand: Reverse

Name: intD [C]

Synonym: YPN_1023

Alternate gene names: 108811188

Gene position: 1181385-1181239 (Counterclockwise)

Preceding gene: 108811196

Following gene: 108811187

Centisome position: 26.05

GC content: 50.34

Gene sequence:

>147_bases
GTGCGCGTTAATGGTAACACAGCATGGAGGCTTGCATTAAAGAGAGCTGGAATCGATAACTTCCGCTTTCACGACCTTCG
ACACACATGGGCAAGTTGGTTAGTTCAGGCTGGAGTTCAGCGGGTAGATAACGTGCTGACACCGTGA

Upstream 100 bases:

>100_bases
GTTATTACGGGACCAGAGCGGCAATCACAAAAAATGGGTGTTTGTTCATCGAAAAGAAAGCACGTTACCCAGCGGGAAAA
AATCAGCCGCAGTGAGGAAA

Downstream 100 bases:

>100_bases
GATATCAGTAGGCGCTGGTGGACGTTCGGCCTCTTTACGCTTAAACTATAACCACTTAATTCTCACTGTTTGGGGCCTGA
GTATGATCACACATTCGCCA

Product: phage integrase

Products: NA

Alternate protein names: Site-Specific Recombinase Phage Integrase Family; APSE-2 Prophage; Prophage Integrase; Tyrosine Recombinase XerD; Phage Integrase Family Protein; Integrase Phage Origin; Integrase Family Protein

Number of amino acids: Translated: 48; Mature: 48

Protein sequence:

>48_residues
MRVNGNTAWRLALKRAGIDNFRFHDLRHTWASWLVQAGVQRVDNVLTP

Sequences:

>Translated_48_residues
MRVNGNTAWRLALKRAGIDNFRFHDLRHTWASWLVQAGVQRVDNVLTP
>Mature_48_residues
MRVNGNTAWRLALKRAGIDNFRFHDLRHTWASWLVQAGVQRVDNVLTP

Specific function: Integrase From The Cryptic Lambdoic Prophage Dlp12. Integrase Is Necessary For Integration Of The Phage Into The Host Genome By Site-Specific Recombination. In Conjunction With Excisionase, Integrase Is Also Necessary For Excision Of The Prophage From Th

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786748, Length=39, Percent_Identity=66.6666666666667, Blast_Score=64, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 5588; Mature: 5588

Theoretical pI: Translated: 12.21; Mature: 12.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVNGNTAWRLALKRAGIDNFRFHDLRHTWASWLVQAGVQRVDNVLTP
CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRVNGNTAWRLALKRAGIDNFRFHDLRHTWASWLVQAGVQRVDNVLTP
CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA