Click here to switch to the map view.

The map label for this gene is rpmJ

Identifier: 108811120

GI number: 108811120

Start: 1109666

End: 1109809

Strand: Reverse

Name: rpmJ

Synonym: YPN_0955

Alternate gene names: 108811120

Gene position: 1109809-1109666 (Counterclockwise)

Preceding gene: 108811121

Following gene: 108811119

Centisome position: 24.47

GC content: 47.92

Gene sequence:

>144_bases
ATGCAAGTATTAAGTTCATTACGTTCGGCAAAGAACCGCCATCCAGACTGCAAGATTGTCCGTCGCCGTGGCCGAGTGTA
CGTAATTTGCAAAAGCAACCCTCGCTTTAAAGCGGTTCAGGGAGGAACCCATAAAAAACGCTGA

Upstream 100 bases:

>100_bases
TAAGCAAAAAGAGTTTGCTAAAGAAGGCAGTACCGCACGCTTCCACCAACGTTTCGGTAGTTTCTTAACAAAGAAAACCA
ACTAATTCGGAGAGTTAACC

Downstream 100 bases:

>100_bases
TGTTAAGTTTGTTATACGCTATCAGAGTGTTGTAATAACTCTCGGTCAACCAAATAACCATCAGTCAAATAACCATTCAT
CAGTCCCCAAAAGGCCCTTT

Product: 50S ribosomal protein L36

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 47; Mature: 47

Protein sequence:

>47_residues
MQVLSSLRSAKNRHPDCKIVRRRGRVYVICKSNPRFKAVQGGTHKKR

Sequences:

>Translated_47_residues
MQVLSSLRSAKNRHPDCKIVRRRGRVYVICKSNPRFKAVQGGTHKKR
>Mature_47_residues
MQVLSSLRSAKNRHPDCKIVRRRGRVYVICKSNPRFKAVQGGTHKKR

Specific function: Unknown

COG id: COG0257

COG function: function code J; Ribosomal protein L36

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L36P family

Homologues:

Organism=Escherichia coli, GI87081713, Length=41, Percent_Identity=80.4878048780488, Blast_Score=75, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL361_YERE8 (A1JNH6)

Other databases:

- EMBL:   AM286415
- RefSeq:   YP_001007291.1
- ProteinModelPortal:   A1JNH6
- SMR:   A1JNH6
- STRING:   A1JNH6
- GeneID:   4715429
- GenomeReviews:   AM286415_GR
- KEGG:   yen:YE3108
- eggNOG:   COG0257
- HOGENOM:   HBG734088
- PhylomeDB:   A1JNH6
- ProtClustDB:   PRK00831
- BioCyc:   YENT393305:YE3108-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00251
- InterPro:   IPR000473
- PANTHER:   PTHR18804
- TIGRFAMs:   TIGR01022

Pfam domain/function: PF00444 Ribosomal_L36; SSF57840 Ribosomal_L36

EC number: NA

Molecular weight: Translated: 5464; Mature: 5464

Theoretical pI: Translated: 12.32; Mature: 12.32

Prosite motif: PS00828 RIBOSOMAL_L36

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
4.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVLSSLRSAKNRHPDCKIVRRRGRVYVICKSNPRFKAVQGGTHKKR
CHHHHHHHHHHCCCCCHHEEECCCCEEEEECCCCCEEEECCCCCCCC
>Mature Secondary Structure
MQVLSSLRSAKNRHPDCKIVRRRGRVYVICKSNPRFKAVQGGTHKKR
CHHHHHHHHHHCCCCCHHEEECCCCEEEEECCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA