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The map label for this gene is ycfQ [H]

Identifier: 108797810

GI number: 108797810

Start: 923050

End: 923598

Strand: Reverse

Name: ycfQ [H]

Synonym: Mmcs_0833

Alternate gene names: 108797810

Gene position: 923598-923050 (Counterclockwise)

Preceding gene: 108797814

Following gene: 108797808

Centisome position: 16.19

GC content: 71.58

Gene sequence:

>549_bases
ATGACCGTCGGGCGGCCGCGGGAGTTCGACCCCGAGCAGGTCGAGGACGCGGCGATGAAGCTGTTCTGGGAGCGGGGCTT
CGACGGCGTCTCGATCTCGGACGTGACGGCTGCGACCGGGGTCAACCGGCGCAGCATCTACGCCGAGTTCGGATCCAAGG
AGAGTCTGTTCGACCGCGCCCTGCGGCGCTACCTCGCCGGCCCCAGTGCGTACACGGCCGAAGCGCTGACGCGTCCGACC
GCCCGCGAGGTCGCCGAGGCGATGATGCACGGTGCGGCCGACACGGTCAGCGGCGACGTGCACGGCTGCCTGACCGTCGG
CGAGGCACCCGGCCTGGCCGAGTGGCGCGACGCCACGGTGCACCGGCTCGCCGAACGCTTCGACGAAGCGGTGGCCGACG
GCGAATTGTCCGGCGTGGACACGCTAGTGCTGGCGCGCTGGGTCGCCGCCGTGTGCCAGGGGATCGCGATCCAGGCCCGC
AGCGGAGCCAGCCGTGCTGATCTGCACGCCGTCGCGAACCTGGCATTGAGGGGTTGGCCCTCAGCGTGA

Upstream 100 bases:

>100_bases
GTAATTACGAACCGATGTGTTACTTAGTACGCTGAGGTCAAGCCGGTATTCACGGGGCAGCATTCCCGATGTGACCGGCA
TCACAGGAGGGTGGTCCGCG

Downstream 100 bases:

>100_bases
TTCACGCACCGACGCGACGGAACAGCTCGGCCGGACGACCCCGCGACCCGCTCGTGGTGATACCCGTCGCCTCGAGCTTG
GGTTCCATCGCACGGCGAAA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MTVGRPREFDPEQVEDAAMKLFWERGFDGVSISDVTAATGVNRRSIYAEFGSKESLFDRALRRYLAGPSAYTAEALTRPT
AREVAEAMMHGAADTVSGDVHGCLTVGEAPGLAEWRDATVHRLAERFDEAVADGELSGVDTLVLARWVAAVCQGIAIQAR
SGASRADLHAVANLALRGWPSA

Sequences:

>Translated_182_residues
MTVGRPREFDPEQVEDAAMKLFWERGFDGVSISDVTAATGVNRRSIYAEFGSKESLFDRALRRYLAGPSAYTAEALTRPT
AREVAEAMMHGAADTVSGDVHGCLTVGEAPGLAEWRDATVHRLAERFDEAVADGELSGVDTLVLARWVAAVCQGIAIQAR
SGASRADLHAVANLALRGWPSA
>Mature_181_residues
TVGRPREFDPEQVEDAAMKLFWERGFDGVSISDVTAATGVNRRSIYAEFGSKESLFDRALRRYLAGPSAYTAEALTRPTA
REVAEAMMHGAADTVSGDVHGCLTVGEAPGLAEWRDATVHRLAERFDEAVADGELSGVDTLVLARWVAAVCQGIAIQARS
GASRADLHAVANLALRGWPSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=193, Percent_Identity=33.6787564766839, Blast_Score=90, Evalue=7e-20,
Organism=Escherichia coli, GI87082397, Length=106, Percent_Identity=39.622641509434, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 19490; Mature: 19359

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVGRPREFDPEQVEDAAMKLFWERGFDGVSISDVTAATGVNRRSIYAEFGSKESLFDRA
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHCCHHHHHHHH
LRRYLAGPSAYTAEALTRPTAREVAEAMMHGAADTVSGDVHGCLTVGEAPGLAEWRDATV
HHHHHCCCCHHHHHHHCCCHHHHHHHHHHHCCHHHCCCCCCEEEEECCCCCCHHHHHHHH
HRLAERFDEAVADGELSGVDTLVLARWVAAVCQGIAIQARSGASRADLHAVANLALRGWP
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHEECCCCCCHHHHHHHHHHHHCCCC
SA
CC
>Mature Secondary Structure 
TVGRPREFDPEQVEDAAMKLFWERGFDGVSISDVTAATGVNRRSIYAEFGSKESLFDRA
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHCCHHHHHHHH
LRRYLAGPSAYTAEALTRPTAREVAEAMMHGAADTVSGDVHGCLTVGEAPGLAEWRDATV
HHHHHCCCCHHHHHHHCCCHHHHHHHHHHHCCHHHCCCCCCEEEEECCCCCCHHHHHHHH
HRLAERFDEAVADGELSGVDTLVLARWVAAVCQGIAIQARSGASRADLHAVANLALRGWP
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHEECCCCCCHHHHHHHHHHHHCCCC
SA
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]