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The map label for this gene is 108797196

Identifier: 108797196

GI number: 108797196

Start: 236378

End: 236905

Strand: Reverse

Name: 108797196

Synonym: Mmcs_0216

Alternate gene names: NA

Gene position: 236905-236378 (Counterclockwise)

Preceding gene: 108797197

Following gene: 108797193

Centisome position: 4.15

GC content: 71.21

Gene sequence:

>528_bases
ATGCTCATCGGCGCGGCCGAGGTGCTCCGCGAGCGCGGCGCCGCCGGCGTCACCATCGACGAAGTGCTCCAGCGCAGCGG
CGCACCGCGCGGCAGCGTCTACTACCACTTCCCCGAGGGTCGCAGTCAGATCGTCGCCGAGGCGCTGGAGTACGCCGGGG
AGTCGATCACCTCGCTGATCGACGAGGCCGCCGCCAACGGCGGTCGCTATCTGGTGCAGCACTTCGTCGACTTCTGGGAC
CGCGTGCTGGCCGAGAGCGACTTCACCGCGGGCTGTCCGGTGGTCGCCGCGGCGATCGGCTCCGCCGAGCCGATGGACCC
CAACTCACCTCGGTGGCCGGGGCGATCTTCGGGCACTGGCGTGAGGCGCTCACGCGCGCCTTCGAGGTCGACGGGTGCGA
GCAGAGCGAGGCCGCCTCGCTGGCCATCACGTCCATCGCCGCACTGGAGGGCGCCGTGGTGCTGTGCCGGGCCACCCGGG
ACCTCGACCCGCTGCGGCAGGTGCACACCCAACTCGAATTCCTGTTGA

Upstream 100 bases:

>100_bases
CGCGGCCTCGTCTGGCGAGCGATGCCGCAGCGCCCATCCCGTGTCGCCTGAACCAGCGATGACCAGGACTTCCACGAAGC
GCGGGTCGACGCGCACCAAC

Downstream 100 bases:

>100_bases
AGTCTCGGGAGTTCATCCGCCGCAACGGCGTCCCCACCGTCACCCAGTGAGCGCGGCTACACGCCAACGCGCACAGACGA
ATTCGCGGTTGACGGCCGAC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MLIGAAEVLRERGAAGVTIDEVLQRSGAPRGSVYYHFPEGRSQIVAEALEYAGESITSLIDEAAANGGRYLVQHFVDFWD
RVLAESDFTAGCPVVAAAIGSAEPMDPNSPRWPGRSSGTGVRRSRAPSRSTGASRARPPRWPSRPSPHWRAPWCCAGPPG
TSTRCGRCTPNSNSC

Sequences:

>Translated_175_residues
MLIGAAEVLRERGAAGVTIDEVLQRSGAPRGSVYYHFPEGRSQIVAEALEYAGESITSLIDEAAANGGRYLVQHFVDFWD
RVLAESDFTAGCPVVAAAIGSAEPMDPNSPRWPGRSSGTGVRRSRAPSRSTGASRARPPRWPSRPSPHWRAPWCCAGPPG
TSTRCGRCTPNSNSC
>Mature_175_residues
MLIGAAEVLRERGAAGVTIDEVLQRSGAPRGSVYYHFPEGRSQIVAEALEYAGESITSLIDEAAANGGRYLVQHFVDFWD
RVLAESDFTAGCPVVAAAIGSAEPMDPNSPRWPGRSSGTGVRRSRAPSRSTGASRARPPRWPSRPSPHWRAPWCCAGPPG
TSTRCGRCTPNSNSC

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 18696; Mature: 18696

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIGAAEVLRERGAAGVTIDEVLQRSGAPRGSVYYHFPEGRSQIVAEALEYAGESITSLI
CCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
DEAAANGGRYLVQHFVDFWDRVLAESDFTAGCPVVAAAIGSAEPMDPNSPRWPGRSSGTG
HHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC
VRRSRAPSRSTGASRARPPRWPSRPSPHWRAPWCCAGPPGTSTRCGRCTPNSNSC
CHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLIGAAEVLRERGAAGVTIDEVLQRSGAPRGSVYYHFPEGRSQIVAEALEYAGESITSLI
CCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
DEAAANGGRYLVQHFVDFWDRVLAESDFTAGCPVVAAAIGSAEPMDPNSPRWPGRSSGTG
HHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC
VRRSRAPSRSTGASRARPPRWPSRPSPHWRAPWCCAGPPGTSTRCGRCTPNSNSC
CHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]