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The map label for this gene is intD [C]

Identifier: 108761635

GI number: 108761635

Start: 6071158

End: 6072162

Strand: Direct

Name: intD [C]

Synonym: MXAN_4852

Alternate gene names: 108761635

Gene position: 6071158-6072162 (Clockwise)

Preceding gene: 108761653

Following gene: 108763420

Centisome position: 66.43

GC content: 63.08

Gene sequence:

>1005_bases
GTGGGACCCTTTTCGCACAGCGGGTGGAACTCCACGAAACCGGGGCAACTTCACAACAAGCACTCAAGCGTCGACAGCAA
ACGACAGATTCTCAGAGATCATATCCTCCCATTCTTCGGGAAGGTGGCGCTCGCGAACATCGGCTTGGCCGAAATCGAAG
ACTTCAAGGCGCACATGCGCAAGAAGAAGTCGGCAGCTCACAAGCGGAAGGACTCCGCGTCAAAGCGAGCCATCCGGAAG
CGGCAGCGTAGCGAGCCCAAGCCCCTGAGCCTGAAGACCATCAACAACGTGCTGACCGTGCTTCACAAGCTCCTGACGCT
CGCAGAAGAGCATGGGGTCATCCGGCAGGCGCCGCGCGTAAAGCCCTTTGGGAAGCTACCGAAGCCTCCCTTCGACTTCC
TGAGCTTTGAGGAAGCGGATCAGCTTCTCGCCGTCGCTGAGCCCGAATGGCGCACGTTGCTGCGCGTCGCCATCAAGACG
GGGCTTCGGCAGGGGGAGCTGATCGGGCTCCGGTGGCACGACCTGACCCTGACGCGGGGCCTGCTTCACGTTCGCAGGAC
CATTTGGCGCGGGATAGAGGGTTTGCCGAAGGGTGGGCGTGAACGGACGGTCGACTTGCCCGCCTCCGTGGTTGATGCGC
TCAACGCCCACCGGCACCGTCGGGGGCGGTTCGTCTTCTGTCAGGAGGACGGGCAGCCACTCACCAAGGGCAAGATGGCG
GCACCGCTGGGTCGCGCCCTCCGGGCGGCGGGCATCACCCGCGAAGTGGGGCAAATCGGCTGGCACGACCTGCGCCATAC
CTACGGCAGCCATCTCGCGATGAGGGGTATCCCGCTGAAGGTGATTCAGGAGCTGATAGGGCACGCGACCATCGAGATGA
CGAATCGCTACGCCCACCTGAGCCCCGACACTCGGAGAGAGGCAGTCGCCGTTTTGGACCGGCCTCTCGCTCTGCCGTGC
GACATACGTGCAACATGGAAGGAGGCCGCTCCTAACCGCACGTAA

Upstream 100 bases:

>100_bases
GAACTCTCGTGCGAGGCTTTTTCCGGAGCGGCCGGCTTTCAACAGCTCGACGACCCGCTCACGGAACTCCGGCGGGTATG
GGGGACGTGACTTCGGCATC

Downstream 100 bases:

>100_bases
TCACTGAACAGTTCAATGCACGAGCCGGGGATCGAACCCGGACGGCCCTTACGGGCCAGCGGATTTTAAGTCCGCTGCGT
CTGCCAGTTCCGCCACTCGT

Product: phage integrase family site specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MGPFSHSGWNSTKPGQLHNKHSSVDSKRQILRDHILPFFGKVALANIGLAEIEDFKAHMRKKKSAAHKRKDSASKRAIRK
RQRSEPKPLSLKTINNVLTVLHKLLTLAEEHGVIRQAPRVKPFGKLPKPPFDFLSFEEADQLLAVAEPEWRTLLRVAIKT
GLRQGELIGLRWHDLTLTRGLLHVRRTIWRGIEGLPKGGRERTVDLPASVVDALNAHRHRRGRFVFCQEDGQPLTKGKMA
APLGRALRAAGITREVGQIGWHDLRHTYGSHLAMRGIPLKVIQELIGHATIEMTNRYAHLSPDTRREAVAVLDRPLALPC
DIRATWKEAAPNRT

Sequences:

>Translated_334_residues
MGPFSHSGWNSTKPGQLHNKHSSVDSKRQILRDHILPFFGKVALANIGLAEIEDFKAHMRKKKSAAHKRKDSASKRAIRK
RQRSEPKPLSLKTINNVLTVLHKLLTLAEEHGVIRQAPRVKPFGKLPKPPFDFLSFEEADQLLAVAEPEWRTLLRVAIKT
GLRQGELIGLRWHDLTLTRGLLHVRRTIWRGIEGLPKGGRERTVDLPASVVDALNAHRHRRGRFVFCQEDGQPLTKGKMA
APLGRALRAAGITREVGQIGWHDLRHTYGSHLAMRGIPLKVIQELIGHATIEMTNRYAHLSPDTRREAVAVLDRPLALPC
DIRATWKEAAPNRT
>Mature_333_residues
GPFSHSGWNSTKPGQLHNKHSSVDSKRQILRDHILPFFGKVALANIGLAEIEDFKAHMRKKKSAAHKRKDSASKRAIRKR
QRSEPKPLSLKTINNVLTVLHKLLTLAEEHGVIRQAPRVKPFGKLPKPPFDFLSFEEADQLLAVAEPEWRTLLRVAIKTG
LRQGELIGLRWHDLTLTRGLLHVRRTIWRGIEGLPKGGRERTVDLPASVVDALNAHRHRRGRFVFCQEDGQPLTKGKMAA
PLGRALRAAGITREVGQIGWHDLRHTYGSHLAMRGIPLKVIQELIGHATIEMTNRYAHLSPDTRREAVAVLDRPLALPCD
IRATWKEAAPNRT

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=291, Percent_Identity=28.5223367697594, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787607, Length=275, Percent_Identity=27.6363636363636, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789261, Length=167, Percent_Identity=28.7425149700599, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37633; Mature: 37502

Theoretical pI: Translated: 11.42; Mature: 11.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGPFSHSGWNSTKPGQLHNKHSSVDSKRQILRDHILPFFGKVALANIGLAEIEDFKAHMR
CCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
KKKSAAHKRKDSASKRAIRKRQRSEPKPLSLKTINNVLTVLHKLLTLAEEHGVIRQAPRV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCC
KPFGKLPKPPFDFLSFEEADQLLAVAEPEWRTLLRVAIKTGLRQGELIGLRWHDLTLTRG
CCCCCCCCCCHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHH
LLHVRRTIWRGIEGLPKGGRERTVDLPASVVDALNAHRHRRGRFVFCQEDGQPLTKGKMA
HHHHHHHHHHHHCCCCCCCCCCEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHH
APLGRALRAAGITREVGQIGWHDLRHTYGSHLAMRGIPLKVIQELIGHATIEMTNRYAHL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHCCEEEC
SPDTRREAVAVLDRPLALPCDIRATWKEAAPNRT
CCHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCC
>Mature Secondary Structure 
GPFSHSGWNSTKPGQLHNKHSSVDSKRQILRDHILPFFGKVALANIGLAEIEDFKAHMR
CCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
KKKSAAHKRKDSASKRAIRKRQRSEPKPLSLKTINNVLTVLHKLLTLAEEHGVIRQAPRV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCC
KPFGKLPKPPFDFLSFEEADQLLAVAEPEWRTLLRVAIKTGLRQGELIGLRWHDLTLTRG
CCCCCCCCCCHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHH
LLHVRRTIWRGIEGLPKGGRERTVDLPASVVDALNAHRHRRGRFVFCQEDGQPLTKGKMA
HHHHHHHHHHHHCCCCCCCCCCEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHH
APLGRALRAAGITREVGQIGWHDLRHTYGSHLAMRGIPLKVIQELIGHATIEMTNRYAHL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHCCEEEC
SPDTRREAVAVLDRPLALPCDIRATWKEAAPNRT
CCHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]