Click here to switch to the map view.

The map label for this gene is yfjD [C]

Identifier: 108761587

GI number: 108761587

Start: 5993842

End: 5995125

Strand: Direct

Name: yfjD [C]

Synonym: MXAN_4795

Alternate gene names: 108761587

Gene position: 5993842-5995125 (Clockwise)

Preceding gene: 108763541

Following gene: 108762488

Centisome position: 65.58

GC content: 68.3

Gene sequence:

>1284_bases
TTGCTGGTCCTGGCCAACGGCGTCTTCGCCGGTGCGGAGCTGGCCATCATCTCTGTCCGCCGGACACGGCTGCGGGAACT
GATTGAAGAAGGCAGCACCTCCGCTAAAGCGGTGGAGGCCCTGCGCGGCAACCCTGAGCGCTTCCTGGCCACGGTGCAGA
TTGGCATCACCGTCATCGGCGCCACGGCGGCCGCGTTCGGTGGCGCGAGCATCGCCACGCGTCTGGGTGACTTCCTCACG
AGACTGGGAGTGCCCGAGCAGCAAGCGGACGAAGTCGCCCTGGCGGGCGTAGTGGCCTTCGTTTCCTACCTCTCGCTGGT
GCTGGGCGAGCTGGTGCCCAAGTCGCTCGCGCTGCGTGCCGGCGAACGCTATGCGCTGCTCATCGGCCGGCCTCTGCGCG
GCCTGGCGTGGCTGATGCAACCGGTGGTGTGGTTCCTCACCGCCAGCTCCAACGTGGTGCTGCGCCTGTTCGGCGACCGG
ACGAACTTCACCGAAGGCCGCCTGTCCGCGGAGGAGCTCCAGCAGTTGGTGGAGGAGGCGGCGAAGCAGGGCACGTTGGA
TCCGCACGCCGGCGAAATTGCATCACGCGCCTTCGAGATGGGCGACGTGACGGTGGGCGAGCTGTCAGTGGCCCGGGATG
AGATGGTGGCCCTGCGGCGGCACTCCAGTCCGGAGGAGATTCGCCGCGTCCTGCTGGAGGGCGGCCACTCACGCATGCCG
GTGTACGAGGGCACGCTGGACAACATCGTCGGCTACGTCATCGCCAAGGACCTGCTGGGGGTGGCCTGGGAGGGCAACCT
CATCATCCTGGAGGACGTGATGCGTCCGCCCTTCTTCGTCGTGGAGACGATGCGGGCCATGGACGCGCTCAAGGAACTGC
AGAAGCGGCGCATGCAGCTGGCGGTGGTGGTGGACGAGCGCGGCGGTGTGGTGGGGCTCGTCACCGTGGAAGACCTCGTG
GAGGAGCTGGTGGGCGACATCCTCAGCGAGTCCGAGGTGCCGGAGGAGTACGTCAAGCGCGAGGGGCCGAACACCGCCCT
GGTGCTCGGCACCGCGAACATCCGAGACGTCAACCGGGAGCTGTCCCTGGACCTGGACGAGGATCAGGACTACGCCACCG
TGGCCGGCCTGTGCATCGCCCTGTCCGGCGGCGCCATCCCCGAGCCGGGCACGAAGGTCCAGACGGAGGGAGGACTCGTG
CTGGAGGTCGTCGCATCCTCGCCCCGCCGTGTGGACACCGTGCGCTTCCACCTGCCGCAGCGCGAGGAGCCCGTGGAAGC
GTGA

Upstream 100 bases:

>100_bases
TTTGCAGTCACTTGGTGAGTGAGCAGCCCGCCTCTGGCGTATAGGGTAGAGGGCCCCTGAGAGGAGGGCCATTATCGTCA
CCGAGCTTCTCATCATCCTG

Downstream 100 bases:

>100_bases
CGGCGGCACAGCGCCCGCTGTCCTATGGACGCGCGGGCTGGGTGAAGCAAGTGAGGTCGGCGGACGACCCGAACCCGACG
GCACTCCGCGCGGAGATGAA

Product: CBS/transporter associated domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MLVLANGVFAGAELAIISVRRTRLRELIEEGSTSAKAVEALRGNPERFLATVQIGITVIGATAAAFGGASIATRLGDFLT
RLGVPEQQADEVALAGVVAFVSYLSLVLGELVPKSLALRAGERYALLIGRPLRGLAWLMQPVVWFLTASSNVVLRLFGDR
TNFTEGRLSAEELQQLVEEAAKQGTLDPHAGEIASRAFEMGDVTVGELSVARDEMVALRRHSSPEEIRRVLLEGGHSRMP
VYEGTLDNIVGYVIAKDLLGVAWEGNLIILEDVMRPPFFVVETMRAMDALKELQKRRMQLAVVVDERGGVVGLVTVEDLV
EELVGDILSESEVPEEYVKREGPNTALVLGTANIRDVNRELSLDLDEDQDYATVAGLCIALSGGAIPEPGTKVQTEGGLV
LEVVASSPRRVDTVRFHLPQREEPVEA

Sequences:

>Translated_427_residues
MLVLANGVFAGAELAIISVRRTRLRELIEEGSTSAKAVEALRGNPERFLATVQIGITVIGATAAAFGGASIATRLGDFLT
RLGVPEQQADEVALAGVVAFVSYLSLVLGELVPKSLALRAGERYALLIGRPLRGLAWLMQPVVWFLTASSNVVLRLFGDR
TNFTEGRLSAEELQQLVEEAAKQGTLDPHAGEIASRAFEMGDVTVGELSVARDEMVALRRHSSPEEIRRVLLEGGHSRMP
VYEGTLDNIVGYVIAKDLLGVAWEGNLIILEDVMRPPFFVVETMRAMDALKELQKRRMQLAVVVDERGGVVGLVTVEDLV
EELVGDILSESEVPEEYVKREGPNTALVLGTANIRDVNRELSLDLDEDQDYATVAGLCIALSGGAIPEPGTKVQTEGGLV
LEVVASSPRRVDTVRFHLPQREEPVEA
>Mature_427_residues
MLVLANGVFAGAELAIISVRRTRLRELIEEGSTSAKAVEALRGNPERFLATVQIGITVIGATAAAFGGASIATRLGDFLT
RLGVPEQQADEVALAGVVAFVSYLSLVLGELVPKSLALRAGERYALLIGRPLRGLAWLMQPVVWFLTASSNVVLRLFGDR
TNFTEGRLSAEELQQLVEEAAKQGTLDPHAGEIASRAFEMGDVTVGELSVARDEMVALRRHSSPEEIRRVLLEGGHSRMP
VYEGTLDNIVGYVIAKDLLGVAWEGNLIILEDVMRPPFFVVETMRAMDALKELQKRRMQLAVVVDERGGVVGLVTVEDLV
EELVGDILSESEVPEEYVKREGPNTALVLGTANIRDVNRELSLDLDEDQDYATVAGLCIALSGGAIPEPGTKVQTEGGLV
LEVVASSPRRVDTVRFHLPQREEPVEA

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=371, Percent_Identity=28.3018867924528, Blast_Score=183, Evalue=3e-46,
Organism=Escherichia coli, GI145693175, Length=393, Percent_Identity=30.7888040712468, Blast_Score=154, Evalue=1e-38,
Organism=Escherichia coli, GI1790664, Length=417, Percent_Identity=24.9400479616307, Blast_Score=152, Evalue=6e-38,
Organism=Escherichia coli, GI1786879, Length=251, Percent_Identity=29.0836653386454, Blast_Score=102, Evalue=7e-23,
Organism=Escherichia coli, GI87082033, Length=278, Percent_Identity=27.3381294964029, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1788119, Length=201, Percent_Identity=34.8258706467662, Blast_Score=83, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 46195; Mature: 46195

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVLANGVFAGAELAIISVRRTRLRELIEEGSTSAKAVEALRGNPERFLATVQIGITVIG
CEEEECCCCCCCCEEEEHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHEEEEEEEEEEEEE
ATAAAFGGASIATRLGDFLTRLGVPEQQADEVALAGVVAFVSYLSLVLGELVPKSLALRA
HHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GERYALLIGRPLRGLAWLMQPVVWFLTASSNVVLRLFGDRTNFTEGRLSAEELQQLVEEA
CCEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHH
AKQGTLDPHAGEIASRAFEMGDVTVGELSVARDEMVALRRHSSPEEIRRVLLEGGHSRMP
HHCCCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCC
VYEGTLDNIVGYVIAKDLLGVAWEGNLIILEDVMRPPFFVVETMRAMDALKELQKRRMQL
EECCCHHHHHHHHHHHHHHCEEECCCEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHEEE
AVVVDERGGVVGLVTVEDLVEELVGDILSESEVPEEYVKREGPNTALVLGTANIRDVNRE
EEEEECCCCEEEEEEHHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEEEEECCCHHHCCHH
LSLDLDEDQDYATVAGLCIALSGGAIPEPGTKVQTEGGLVLEVVASSPRRVDTVRFHLPQ
CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEECCCCEEEEEECCCCCCEEEEEEECCC
REEPVEA
CCCCCCC
>Mature Secondary Structure
MLVLANGVFAGAELAIISVRRTRLRELIEEGSTSAKAVEALRGNPERFLATVQIGITVIG
CEEEECCCCCCCCEEEEHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHEEEEEEEEEEEEE
ATAAAFGGASIATRLGDFLTRLGVPEQQADEVALAGVVAFVSYLSLVLGELVPKSLALRA
HHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GERYALLIGRPLRGLAWLMQPVVWFLTASSNVVLRLFGDRTNFTEGRLSAEELQQLVEEA
CCEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHH
AKQGTLDPHAGEIASRAFEMGDVTVGELSVARDEMVALRRHSSPEEIRRVLLEGGHSRMP
HHCCCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCC
VYEGTLDNIVGYVIAKDLLGVAWEGNLIILEDVMRPPFFVVETMRAMDALKELQKRRMQL
EECCCHHHHHHHHHHHHHHCEEECCCEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHEEE
AVVVDERGGVVGLVTVEDLVEELVGDILSESEVPEEYVKREGPNTALVLGTANIRDVNRE
EEEEECCCCEEEEEEHHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEEEEECCCHHHCCHH
LSLDLDEDQDYATVAGLCIALSGGAIPEPGTKVQTEGGLVLEVVASSPRRVDTVRFHLPQ
CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEECCCCEEEEEECCCCCCEEEEEEECCC
REEPVEA
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]