| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is choB [H]
Identifier: 108760749
GI number: 108760749
Start: 4591814
End: 4594177
Strand: Reverse
Name: choB [H]
Synonym: MXAN_3822
Alternate gene names: 108760749
Gene position: 4594177-4591814 (Counterclockwise)
Preceding gene: 108763138
Following gene: 108759420
Centisome position: 50.27
GC content: 68.65
Gene sequence:
>2364_bases ATGGCGCCGACGTACGACGCGCTGGTCATTGGCACCGGCTTTGGGGGAGCGGTGGCGGCTTGCCGGCTGGCACAGGCGGG CTTGACCGTGCGCGTCCTGGAGCGGGGCCTGCGCTACCAGAAGGGGAGCTTTCCCCGCGACTGGAGCAACCCGCTCAACG GCTGGCTGTGGCGGTACGACCAGGGCCTCTTCGACGTGAAGCTGCTGCCGGGGATGAGCATTGTCCAGGCCGCGGGCTAC GGCGGCGGCTCGCTCATCTACGCCAACGTCCACCTGCGCCCGCCCGCGGAGACCTTCGACGCCGACTGGCCGGAGGGCTA CAGCCGCGCCGCGTTGGATCCGTACTACGACCTGGTCGCGTACATGCTGGACCTCCAGCCCATCACCGCGTCCGCACGTG GCCTGCCCACCAAGGCGAAGCGGATGCGGGAGGTCGCGCGCAAACTCGGCCGCGAGCAGCAGTTCTTCTACCCGGACCTT GCCGTGCGCTTCGCCCCCGCCGGCGAGCCGATGCCCAACAAGTTCGGCGTCGCCCAGGAGGGCTGCAACTACTGCGGCGA ATGCGACATCGGATGCAACGTCCGCGCGAAGAACACGCTGGACCTGAACTACCTGGCCGTCGCTGAACAGCAGGGCGCGG AGATGACCACCCAGGCGGAGGCCACGCGCATCGAGCCGCTGTCTCCCATGGGCTATCGCGTCACCTATACCGACCATGCC GCGGGCGGCGCCGAGCGCACCGTGGAGGCCCGCCGCGTGTTCCTGTGCGCCGGCACGGTGAACACCACGGAGCTGCTGCT GCGCTGCCGCGACCAGTGGGGAACGCTCCCGCGCATCAGCGACCGGCTGGGGTGCCGCTATTCGGCCAACGGCGACTTCC TGGCCTTCGCCTTCGAGACGCGCGAGGTGTGGGACCCGTCCGAGGGCCCCACCATCACCACCAGTCTGGTGGTGGACCAG GGGCAGGGCGCGGACAAGACGTGGTTCCTCTTCCAGGAGGGCGGGCACCCCGGGAAGGCGGCGGGGCTGCTTCAGGTGCT GGACATGGGCCGGGACTTCCGTGTCCCCGCGGACCTGCTCCAGAAGCAACTCGTCCGCGCCCTGCGCCGGCGCTCCCAGC CTGAAACCGTCATGGGCAAGGAGCGCGGGCGTTTCCAGGCCGTGTTCCTGGCCATGGGGAGGGATCGCGCCAACGGGCGG CTCGCGCTGCGGCCTTTGACTCGGGACATGGAGGTGCGCTGGGACGTGCCTTCCAACCTGCCGCTGTACCGGACGCAGGA GCAGATCTGCCAGGACATCGCTCGGGCGCTCGGGGCGCGCGCCGTCTTCAACCCCCTGTGGGATCGGCTTCACATCCCCG TGTCAGTCCACAACCTGGGCGGCTGCACCATGGCGGAGGAGCCGGCCTACGGTGTGCTGAACCCGGACGGTGAGGTGCAC GGCCACCCTGGGCTGTACGTGCTGGATGGCGCCGCGCTGCCCGCGAGCACCGGGGTGAACCCTTCATCCACCATCGCCGC GGTGGCGGAGCGCAACGTCGAGGCCGCCATCCGGCAGGTGCTGGGGAACCCCACCTGGACCGCACCTGAGCGGGCCGGAA CGGCTTCGGGCCGGGCGTCGGCGGAACCGTTCCGCGCGTCGATGCGGATGAGCACGAGTGTGGCACCCACGCGGGTGGTG CCAAGAGAGGATCCGATGCGGAGCGTGGTGATTCCAGAGGGAGGCACAGTGCTGTCGCCAACGCCCGTGGTGGGGCTGCG CTTCACCGAGCGGATGCGCGGCTTCATCAACCACGGCCACCTGCCGGACACGGATTACGCGGGCGCCGAGGAGGAGGGCA AGTCAGAGGGCAGGGTGGCCGAGTTCATCCTCACCATCACCTTGCCCAATCTGGACCGCTTCCTCGCGGAGAAGGCCCAT TCAGGCATCGCGCAAGGCACCGTCCACGTCCACGGCCTCACACCTCCTGGCGGAGCGAAGGTGGACCACGGCGTCTTCAA CCTCTTCGTGGACACGGACAGCTACTACGAGCGTCGGATGCTCTACCTGCTGCCCTTCACCGGCATGGACGGCCAGCAGT ACCTGCTGGATGGCTACAAGCATGTCCGGGACGACGACGGCTTCGACATGTGGTCCGACACGTCCACGCTCTACACCGTC ATTCGCCGGGGCAGCGACCGGCACGCGCCCGTGGTCGCCAGCGGCATCATCCGTCTGGGCATGCCGGACTTCCTGCAGCA GCTCACGACCTTCGCCGTGCTGGGAACGACGTCACCGCTGGCGAAGGCCCAGGCCCTGAAGCGTTTTGGCAGCATGTTCA TGGGCAACCTCTGGGACGTCTTCGCGCGAACCAAGCTGGAATAA
Upstream 100 bases:
>100_bases GGGTTCCCCGGATGGGTGGAGGTCGAAGGATCAGACCCTCGTGCGTTAATAAGGTGTCAGTTGAAACCTGCCGCGGGGAC AGGTCTCGACGAGGGGGAAC
Downstream 100 bases:
>100_bases GAGAGGCGCATCGTGGCGAAGGCATCGCGGTACGACGTGGTCGTCGTGGGCTCCGGCTTTGGGGGCTCCATCAGCGCGCT GCGCCTGGCCCAGGCAGGCA
Product: hypothetical protein
Products: NA
Alternate protein names: CHOD [H]
Number of amino acids: Translated: 787; Mature: 786
Protein sequence:
>787_residues MAPTYDALVIGTGFGGAVAACRLAQAGLTVRVLERGLRYQKGSFPRDWSNPLNGWLWRYDQGLFDVKLLPGMSIVQAAGY GGGSLIYANVHLRPPAETFDADWPEGYSRAALDPYYDLVAYMLDLQPITASARGLPTKAKRMREVARKLGREQQFFYPDL AVRFAPAGEPMPNKFGVAQEGCNYCGECDIGCNVRAKNTLDLNYLAVAEQQGAEMTTQAEATRIEPLSPMGYRVTYTDHA AGGAERTVEARRVFLCAGTVNTTELLLRCRDQWGTLPRISDRLGCRYSANGDFLAFAFETREVWDPSEGPTITTSLVVDQ GQGADKTWFLFQEGGHPGKAAGLLQVLDMGRDFRVPADLLQKQLVRALRRRSQPETVMGKERGRFQAVFLAMGRDRANGR LALRPLTRDMEVRWDVPSNLPLYRTQEQICQDIARALGARAVFNPLWDRLHIPVSVHNLGGCTMAEEPAYGVLNPDGEVH GHPGLYVLDGAALPASTGVNPSSTIAAVAERNVEAAIRQVLGNPTWTAPERAGTASGRASAEPFRASMRMSTSVAPTRVV PREDPMRSVVIPEGGTVLSPTPVVGLRFTERMRGFINHGHLPDTDYAGAEEEGKSEGRVAEFILTITLPNLDRFLAEKAH SGIAQGTVHVHGLTPPGGAKVDHGVFNLFVDTDSYYERRMLYLLPFTGMDGQQYLLDGYKHVRDDDGFDMWSDTSTLYTV IRRGSDRHAPVVASGIIRLGMPDFLQQLTTFAVLGTTSPLAKAQALKRFGSMFMGNLWDVFARTKLE
Sequences:
>Translated_787_residues MAPTYDALVIGTGFGGAVAACRLAQAGLTVRVLERGLRYQKGSFPRDWSNPLNGWLWRYDQGLFDVKLLPGMSIVQAAGY GGGSLIYANVHLRPPAETFDADWPEGYSRAALDPYYDLVAYMLDLQPITASARGLPTKAKRMREVARKLGREQQFFYPDL AVRFAPAGEPMPNKFGVAQEGCNYCGECDIGCNVRAKNTLDLNYLAVAEQQGAEMTTQAEATRIEPLSPMGYRVTYTDHA AGGAERTVEARRVFLCAGTVNTTELLLRCRDQWGTLPRISDRLGCRYSANGDFLAFAFETREVWDPSEGPTITTSLVVDQ GQGADKTWFLFQEGGHPGKAAGLLQVLDMGRDFRVPADLLQKQLVRALRRRSQPETVMGKERGRFQAVFLAMGRDRANGR LALRPLTRDMEVRWDVPSNLPLYRTQEQICQDIARALGARAVFNPLWDRLHIPVSVHNLGGCTMAEEPAYGVLNPDGEVH GHPGLYVLDGAALPASTGVNPSSTIAAVAERNVEAAIRQVLGNPTWTAPERAGTASGRASAEPFRASMRMSTSVAPTRVV PREDPMRSVVIPEGGTVLSPTPVVGLRFTERMRGFINHGHLPDTDYAGAEEEGKSEGRVAEFILTITLPNLDRFLAEKAH SGIAQGTVHVHGLTPPGGAKVDHGVFNLFVDTDSYYERRMLYLLPFTGMDGQQYLLDGYKHVRDDDGFDMWSDTSTLYTV IRRGSDRHAPVVASGIIRLGMPDFLQQLTTFAVLGTTSPLAKAQALKRFGSMFMGNLWDVFARTKLE >Mature_786_residues APTYDALVIGTGFGGAVAACRLAQAGLTVRVLERGLRYQKGSFPRDWSNPLNGWLWRYDQGLFDVKLLPGMSIVQAAGYG GGSLIYANVHLRPPAETFDADWPEGYSRAALDPYYDLVAYMLDLQPITASARGLPTKAKRMREVARKLGREQQFFYPDLA VRFAPAGEPMPNKFGVAQEGCNYCGECDIGCNVRAKNTLDLNYLAVAEQQGAEMTTQAEATRIEPLSPMGYRVTYTDHAA GGAERTVEARRVFLCAGTVNTTELLLRCRDQWGTLPRISDRLGCRYSANGDFLAFAFETREVWDPSEGPTITTSLVVDQG QGADKTWFLFQEGGHPGKAAGLLQVLDMGRDFRVPADLLQKQLVRALRRRSQPETVMGKERGRFQAVFLAMGRDRANGRL ALRPLTRDMEVRWDVPSNLPLYRTQEQICQDIARALGARAVFNPLWDRLHIPVSVHNLGGCTMAEEPAYGVLNPDGEVHG HPGLYVLDGAALPASTGVNPSSTIAAVAERNVEAAIRQVLGNPTWTAPERAGTASGRASAEPFRASMRMSTSVAPTRVVP REDPMRSVVIPEGGTVLSPTPVVGLRFTERMRGFINHGHLPDTDYAGAEEEGKSEGRVAEFILTITLPNLDRFLAEKAHS GIAQGTVHVHGLTPPGGAKVDHGVFNLFVDTDSYYERRMLYLLPFTGMDGQQYLLDGYKHVRDDDGFDMWSDTSTLYTVI RRGSDRHAPVVASGIIRLGMPDFLQQLTTFAVLGTTSPLAKAQALKRFGSMFMGNLWDVFARTKLE
Specific function: Unknown
COG id: COG2303
COG function: function code E; Choline dehydrogenase and related flavoproteins
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GMC oxidoreductase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000172 - InterPro: IPR007867 - InterPro: IPR006311 [H]
Pfam domain/function: PF05199 GMC_oxred_C; PF00732 GMC_oxred_N [H]
EC number: =1.1.3.6 [H]
Molecular weight: Translated: 86467; Mature: 86336
Theoretical pI: Translated: 7.20; Mature: 7.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPTYDALVIGTGFGGAVAACRLAQAGLTVRVLERGLRYQKGSFPRDWSNPLNGWLWRYD CCCCCCEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEC QGLFDVKLLPGMSIVQAAGYGGGSLIYANVHLRPPAETFDADWPEGYSRAALDPYYDLVA CCEEEEEECCCCHHHHHCCCCCCEEEEEEEEECCCHHHCCCCCCCCCCCCCCCHHHHHHH YMLDLQPITASARGLPTKAKRMREVARKLGREQQFFYPDLAVRFAPAGEPMPNKFGVAQE HHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCEEEEECCCCCCCCCCCCCHHH GCNYCGECDIGCNVRAKNTLDLNYLAVAEQQGAEMTTQAEATRIEPLSPMGYRVTYTDHA HCCCCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCHHCHHHCCCCCCCCCEEEEEECCC AGGAERTVEARRVFLCAGTVNTTELLLRCRDQWGTLPRISDRLGCRYSANGDFLAFAFET CCCHHHHHEEEEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHCCCEECCCCCEEEEEEEC REVWDPSEGPTITTSLVVDQGQGADKTWFLFQEGGHPGKAAGLLQVLDMGRDFRVPADLL CCCCCCCCCCEEEEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCHHHH QKQLVRALRRRSQPETVMGKERGRFQAVFLAMGRDRANGRLALRPLTRDMEVRWDVPSNL HHHHHHHHHHCCCCCHHHCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCEEEECCCCCC PLYRTQEQICQDIARALGARAVFNPLWDRLHIPVSVHNLGGCTMAEEPAYGVLNPDGEVH CCCCCHHHHHHHHHHHHCHHHHHHHHHHHEECCEEEECCCCCCCCCCCCCCCCCCCCCCC GHPGLYVLDGAALPASTGVNPSSTIAAVAERNVEAAIRQVLGNPTWTAPERAGTASGRAS CCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC AEPFRASMRMSTSVAPTRVVPREDPMRSVVIPEGGTVLSPTPVVGLRFTERMRGFINHGH CCHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCEEECCCCEEEHHHHHHHHHHHHCCC LPDTDYAGAEEEGKSEGRVAEFILTITLPNLDRFLAEKAHSGIAQGTVHVHGLTPPGGAK CCCCCCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCC VDHGVFNLFVDTDSYYERRMLYLLPFTGMDGQQYLLDGYKHVRDDDGFDMWSDTSTLYTV CCCCEEEEEECCCHHHHCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHH IRRGSDRHAPVVASGIIRLGMPDFLQQLTTFAVLGTTSPLAKAQALKRFGSMFMGNLWDV HHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH FARTKLE HHHHCCC >Mature Secondary Structure APTYDALVIGTGFGGAVAACRLAQAGLTVRVLERGLRYQKGSFPRDWSNPLNGWLWRYD CCCCCEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEC QGLFDVKLLPGMSIVQAAGYGGGSLIYANVHLRPPAETFDADWPEGYSRAALDPYYDLVA CCEEEEEECCCCHHHHHCCCCCCEEEEEEEEECCCHHHCCCCCCCCCCCCCCCHHHHHHH YMLDLQPITASARGLPTKAKRMREVARKLGREQQFFYPDLAVRFAPAGEPMPNKFGVAQE HHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCEEEEECCCCCCCCCCCCCHHH GCNYCGECDIGCNVRAKNTLDLNYLAVAEQQGAEMTTQAEATRIEPLSPMGYRVTYTDHA HCCCCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCHHCHHHCCCCCCCCCEEEEEECCC AGGAERTVEARRVFLCAGTVNTTELLLRCRDQWGTLPRISDRLGCRYSANGDFLAFAFET CCCHHHHHEEEEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHCCCEECCCCCEEEEEEEC REVWDPSEGPTITTSLVVDQGQGADKTWFLFQEGGHPGKAAGLLQVLDMGRDFRVPADLL CCCCCCCCCCEEEEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCHHHH QKQLVRALRRRSQPETVMGKERGRFQAVFLAMGRDRANGRLALRPLTRDMEVRWDVPSNL HHHHHHHHHHCCCCCHHHCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCEEEECCCCCC PLYRTQEQICQDIARALGARAVFNPLWDRLHIPVSVHNLGGCTMAEEPAYGVLNPDGEVH CCCCCHHHHHHHHHHHHCHHHHHHHHHHHEECCEEEECCCCCCCCCCCCCCCCCCCCCCC GHPGLYVLDGAALPASTGVNPSSTIAAVAERNVEAAIRQVLGNPTWTAPERAGTASGRAS CCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC AEPFRASMRMSTSVAPTRVVPREDPMRSVVIPEGGTVLSPTPVVGLRFTERMRGFINHGH CCHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCEEECCCCEEEHHHHHHHHHHHHCCC LPDTDYAGAEEEGKSEGRVAEFILTITLPNLDRFLAEKAHSGIAQGTVHVHGLTPPGGAK CCCCCCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCC VDHGVFNLFVDTDSYYERRMLYLLPFTGMDGQQYLLDGYKHVRDDDGFDMWSDTSTLYTV CCCCEEEEEECCCHHHHCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHH IRRGSDRHAPVVASGIIRLGMPDFLQQLTTFAVLGTTSPLAKAQALKRFGSMFMGNLWDV HHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH FARTKLE HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1879703; 2271066; 2051487 [H]