| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is 108758869
Identifier: 108758869
GI number: 108758869
Start: 4557242
End: 4559641
Strand: Reverse
Name: 108758869
Synonym: MXAN_3792
Alternate gene names: NA
Gene position: 4559641-4557242 (Counterclockwise)
Preceding gene: 108763761
Following gene: 108757905
Centisome position: 49.89
GC content: 69.79
Gene sequence:
>2400_bases GTGTCCCGCCCTCCGGGCCAGGCACGCATCGAGGCCCCCGTCGTAGGGCTCACGGCGGGATTGCCGGGAGGCTTCCGGTG CATCGCCGAGGATCCGGACGGTGACGCGCTGACCTATGCGTTCGACTGGGGGCGCGCGAAGGCGGAAGTCAGCCTGTCCG AACGTGTTCCCAGCGGCACCGCCGGTGACGTGGCTCCCGTCTTCCAGACGAAGGGGCAGTTTTCGGCCCGCTGCCGCGCG GTCGATACCCACGGACAGTTGGGGGCGTGGTCCGAATACGCGCTCTTCGAAGTGCACCCGGCGCCACCGCTGGATGACGG GAAGCGGGAGCTCACGGTGGAGGTCTTTGGCCACGGGCGCGTGACGAGCACGCCGAGCGGCATCGACTGCACGTCCACCT GCAGCGCTCGCTTCGAGGTCGGAGCCGAAGTCACCCTATCCGCGGAGCCACAGCCCGGCTGGCGCTTCACGGGGCTGCTG CGCTGTGGCACCGAGCGCGCGTCCCAGGTCGTCCGGGTCGACCACAACTATCATTGTGGGGCAGGGTTCGCCCGACGGGA GGAGCAGGCCGTGGAGTGGCGCCAGACGGGCGCCTCCTACCCCAGCGATGCGTCGTGGGGCCCCGATGGCCGGCTGCTCG CGGTGTTGGATCAAAGGGGCACGCGAGGCGGCCTGCGCATCTGGAATGCGGGCCTTGGGCAGGTTGCCCGCATCATCCAC CAGGACTCCACTGACATCCGTTCGGTGTCCTGGGGCCCGCGGGACGAGGACCTAGCGGTGGGGCTCGCGGATGGGCGACT GGCCTTGATCGACCCGGCGACGGGAGCGCTCCACCAGACGTGGAGCGCCCACGCTGGGCCCGTGGTGGGGCTGGCCTGGT ATGCGAGAGGAAATGAGCTGGCCAGCGTCAGCCACCCGGAGACAGGCGGCGCGGAGGTGCGCTTCTGGGCCGCGTCCTCG GGGACGGAGAGCCGGGCGCCGTTGCGGACGGCGCGCACCCTCCGGAAAATCCACTGGAGCCCGGACGGAGCGCGGGTTGC GTTGGAGATGGCGGGCGAGCAGGTGGAAATCCACAATCTGGACCCCTGGGTGCAGGTCCACGAGGTGGGGCATGGCGACA GCTTCTCCTGGAGTCCGGACGGCGCTCGCTACGCCGTGGGGAGCTACCGGAACGTCCGGGTGTACGAAACGGCAACCCAC GAGCTCCAGGCCTCCTGGTTTGGACCGTGGAGCGTGTCGTCCCGCATGGACTGGAGCCCAACCCAGGACTGGCTCGTCAT CGTGGACCTGGTCCACTCCCTGACGGTCCTGAACGTCAACACCGGGACGGTGGTCGCAAACGGCACCGAGGTGCCCCCCA ATCCGTTGGACGCCCTGGGCTTCAGCGCCGTGCGCTTCCACCCGGTCCACGACTCGTTCGTCGCGGTGGCCCGCAGGCCC GCGTCGGTCTCCACCTTCAGCGTGGACGCGCAGCAATCGCGGCTGCAGCGCCACGAGTTGGTGGCCCATTCGTCCGCGAT CAACGCCACGAAGTGGAGTCCGGCGGGGGACCGGCTGGCGTCAGCGGGCGACGACGGAAAGGTCCGGCTCTGGGGCGCCG CGGGCCAGGCGCTGGCGACTTTGGACGGACACGAGGGCAAGTCGGTCCGCGCGCTCGGATGGGACGCGAGTGGCGCACGG CTCGCGTCGGGAGGTGCTGATGGCCGCGTCTGCGTCTGGGACGCCGGCACGGGCCGGCTGACGCAGCCGCCGCTGCAGAT GATGCAACGGGCGCAGGGGCATACACCCAAGGTGGAGCACGTCGCACTGAGTCCGGACGGCCGCACGCTGGCGAGCGCGG GCGCGACGCTATTTCTCACGGGAAGCATGACCAGCGTCCAGGTCTGGGACGTCGCTTCGCGCACGGAGCTGCTCAACATC CCAGAGACGGACAGCCCCGTCGTAGCGCTGGGATGGACGCCGGACAGCCAGTCGCTGATCATCGTCTATACCCACGCGGC ATGGGATGTCTGGAACCGCAGCTCCGGGGTGCTCAAGCGCGTGGAGTCCGCCCCGGAAATCCTGACCACCGCGGCGCTCA GTCCCGATGGAACCCGGTTGGCCTGCAGCGACCGGCTGGGGGTGTCCGTCCTGGACGTGGGGACGGGGGCTGTCGTCGCG GAGACCCCTATGTGGATGAGGCAACTGTCCCTGGCGTGGCACCCGGACGGTACGCGCTTCTCCGGTGGCGGTGCGTATCA GCTCGTCTTCGACTGGCAGGTGCATGAGCACGGCCAACTTCTGCCCAGCGTCATGGGGGTCCACGACAGCACGGTCCTGG GCGCATCATGGCGCGGGGACGGCGAGGTCCTCACCACAGGTGGCGCGGACATGGCGCTGGTCACCTGGCGCGCCCGCTAG
Upstream 100 bases:
>100_bases TGTTCGTTCTGTTGCCTGGGGCAGTCGCGCCGGGGTGGCCTGCGCGCTCATGCTGAGTGCGGTGTTTGCTTGTTCGGATG GAAGCAGCCCGAATCCCTCT
Downstream 100 bases:
>100_bases GAACCGTCCGACCGGTAGGTTGGGCAGGGGCCCATCCAGCACACCGCCAGCCTTCGTGACTTCGCGCGGTTACGAGGGCT GGCGCGTTGCGTCGTGCACA
Product: WD domain-/G-beta repeat-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 799; Mature: 798
Protein sequence:
>799_residues MSRPPGQARIEAPVVGLTAGLPGGFRCIAEDPDGDALTYAFDWGRAKAEVSLSERVPSGTAGDVAPVFQTKGQFSARCRA VDTHGQLGAWSEYALFEVHPAPPLDDGKRELTVEVFGHGRVTSTPSGIDCTSTCSARFEVGAEVTLSAEPQPGWRFTGLL RCGTERASQVVRVDHNYHCGAGFARREEQAVEWRQTGASYPSDASWGPDGRLLAVLDQRGTRGGLRIWNAGLGQVARIIH QDSTDIRSVSWGPRDEDLAVGLADGRLALIDPATGALHQTWSAHAGPVVGLAWYARGNELASVSHPETGGAEVRFWAASS GTESRAPLRTARTLRKIHWSPDGARVALEMAGEQVEIHNLDPWVQVHEVGHGDSFSWSPDGARYAVGSYRNVRVYETATH ELQASWFGPWSVSSRMDWSPTQDWLVIVDLVHSLTVLNVNTGTVVANGTEVPPNPLDALGFSAVRFHPVHDSFVAVARRP ASVSTFSVDAQQSRLQRHELVAHSSAINATKWSPAGDRLASAGDDGKVRLWGAAGQALATLDGHEGKSVRALGWDASGAR LASGGADGRVCVWDAGTGRLTQPPLQMMQRAQGHTPKVEHVALSPDGRTLASAGATLFLTGSMTSVQVWDVASRTELLNI PETDSPVVALGWTPDSQSLIIVYTHAAWDVWNRSSGVLKRVESAPEILTTAALSPDGTRLACSDRLGVSVLDVGTGAVVA ETPMWMRQLSLAWHPDGTRFSGGGAYQLVFDWQVHEHGQLLPSVMGVHDSTVLGASWRGDGEVLTTGGADMALVTWRAR
Sequences:
>Translated_799_residues MSRPPGQARIEAPVVGLTAGLPGGFRCIAEDPDGDALTYAFDWGRAKAEVSLSERVPSGTAGDVAPVFQTKGQFSARCRA VDTHGQLGAWSEYALFEVHPAPPLDDGKRELTVEVFGHGRVTSTPSGIDCTSTCSARFEVGAEVTLSAEPQPGWRFTGLL RCGTERASQVVRVDHNYHCGAGFARREEQAVEWRQTGASYPSDASWGPDGRLLAVLDQRGTRGGLRIWNAGLGQVARIIH QDSTDIRSVSWGPRDEDLAVGLADGRLALIDPATGALHQTWSAHAGPVVGLAWYARGNELASVSHPETGGAEVRFWAASS GTESRAPLRTARTLRKIHWSPDGARVALEMAGEQVEIHNLDPWVQVHEVGHGDSFSWSPDGARYAVGSYRNVRVYETATH ELQASWFGPWSVSSRMDWSPTQDWLVIVDLVHSLTVLNVNTGTVVANGTEVPPNPLDALGFSAVRFHPVHDSFVAVARRP ASVSTFSVDAQQSRLQRHELVAHSSAINATKWSPAGDRLASAGDDGKVRLWGAAGQALATLDGHEGKSVRALGWDASGAR LASGGADGRVCVWDAGTGRLTQPPLQMMQRAQGHTPKVEHVALSPDGRTLASAGATLFLTGSMTSVQVWDVASRTELLNI PETDSPVVALGWTPDSQSLIIVYTHAAWDVWNRSSGVLKRVESAPEILTTAALSPDGTRLACSDRLGVSVLDVGTGAVVA ETPMWMRQLSLAWHPDGTRFSGGGAYQLVFDWQVHEHGQLLPSVMGVHDSTVLGASWRGDGEVLTTGGADMALVTWRAR >Mature_798_residues SRPPGQARIEAPVVGLTAGLPGGFRCIAEDPDGDALTYAFDWGRAKAEVSLSERVPSGTAGDVAPVFQTKGQFSARCRAV DTHGQLGAWSEYALFEVHPAPPLDDGKRELTVEVFGHGRVTSTPSGIDCTSTCSARFEVGAEVTLSAEPQPGWRFTGLLR CGTERASQVVRVDHNYHCGAGFARREEQAVEWRQTGASYPSDASWGPDGRLLAVLDQRGTRGGLRIWNAGLGQVARIIHQ DSTDIRSVSWGPRDEDLAVGLADGRLALIDPATGALHQTWSAHAGPVVGLAWYARGNELASVSHPETGGAEVRFWAASSG TESRAPLRTARTLRKIHWSPDGARVALEMAGEQVEIHNLDPWVQVHEVGHGDSFSWSPDGARYAVGSYRNVRVYETATHE LQASWFGPWSVSSRMDWSPTQDWLVIVDLVHSLTVLNVNTGTVVANGTEVPPNPLDALGFSAVRFHPVHDSFVAVARRPA SVSTFSVDAQQSRLQRHELVAHSSAINATKWSPAGDRLASAGDDGKVRLWGAAGQALATLDGHEGKSVRALGWDASGARL ASGGADGRVCVWDAGTGRLTQPPLQMMQRAQGHTPKVEHVALSPDGRTLASAGATLFLTGSMTSVQVWDVASRTELLNIP ETDSPVVALGWTPDSQSLIIVYTHAAWDVWNRSSGVLKRVESAPEILTTAALSPDGTRLACSDRLGVSVLDVGTGAVVAE TPMWMRQLSLAWHPDGTRFSGGGAYQLVFDWQVHEHGQLLPSVMGVHDSTVLGASWRGDGEVLTTGGADMALVTWRAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 15 WD repeats [H]
Homologues:
Organism=Homo sapiens, GI115298668, Length=309, Percent_Identity=26.537216828479, Blast_Score=72, Evalue=2e-12, Organism=Homo sapiens, GI16554629, Length=208, Percent_Identity=23.5576923076923, Blast_Score=69, Evalue=2e-11, Organism=Homo sapiens, GI16554627, Length=208, Percent_Identity=23.5576923076923, Blast_Score=69, Evalue=2e-11, Organism=Homo sapiens, GI21071067, Length=164, Percent_Identity=29.8780487804878, Blast_Score=69, Evalue=2e-11, Organism=Homo sapiens, GI7657439, Length=130, Percent_Identity=32.3076923076923, Blast_Score=69, Evalue=2e-11, Organism=Homo sapiens, GI4757988, Length=210, Percent_Identity=27.1428571428571, Blast_Score=69, Evalue=3e-11, Organism=Drosophila melanogaster, GI17136870, Length=213, Percent_Identity=27.6995305164319, Blast_Score=72, Evalue=2e-12, Organism=Drosophila melanogaster, GI17864654, Length=208, Percent_Identity=25, Blast_Score=71, Evalue=3e-12, Organism=Drosophila melanogaster, GI24642416, Length=152, Percent_Identity=32.2368421052632, Blast_Score=70, Evalue=6e-12, Organism=Drosophila melanogaster, GI24642418, Length=152, Percent_Identity=32.2368421052632, Blast_Score=70, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000767 - InterPro: IPR020472 - InterPro: IPR002182 - InterPro: IPR015943 - InterPro: IPR001680 - InterPro: IPR011046 - InterPro: IPR019782 - InterPro: IPR019775 - InterPro: IPR017986 - InterPro: IPR019781 [H]
Pfam domain/function: PF00931 NB-ARC; PF00400 WD40 [H]
EC number: NA
Molecular weight: Translated: 85513; Mature: 85382
Theoretical pI: Translated: 6.23; Mature: 6.23
Prosite motif: PS00678 WD_REPEATS_1 ; PS50082 WD_REPEATS_2 ; PS50294 WD_REPEATS_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRPPGQARIEAPVVGLTAGLPGGFRCIAEDPDGDALTYAFDWGRAKAEVSLSERVPSGT CCCCCCCCEEECCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEHHHCCCCCC AGDVAPVFQTKGQFSARCRAVDTHGQLGAWSEYALFEVHPAPPLDDGKRELTVEVFGHGR CCCCCHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEECCE VTSTPSGIDCTSTCSARFEVGAEVTLSAEPQPGWRFTGLLRCGTERASQVVRVDHNYHCG EECCCCCCCCCCCCCEEEECCCEEEEECCCCCCCEEEEEEEECCHHHCCEEEECCCCCCC AGFARREEQAVEWRQTGASYPSDASWGPDGRLLAVLDQRGTRGGLRIWNAGLGQVARIIH CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCHHHHHHHHH QDSTDIRSVSWGPRDEDLAVGLADGRLALIDPATGALHQTWSAHAGPVVGLAWYARGNEL CCCCCCEECCCCCCCCCEEEEECCCCEEEECCCCCCHHHCCCCCCCCEEEEEEEECCCCE ASVSHPETGGAEVRFWAASSGTESRAPLRTARTLRKIHWSPDGARVALEMAGEQVEIHNL EECCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHEECCCCCCEEEEEECCCEEEEECC DPWVQVHEVGHGDSFSWSPDGARYAVGSYRNVRVYETATHELQASWFGPWSVSSRMDWSP CCCEEEEECCCCCCCCCCCCCCEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCC TQDWLVIVDLVHSLTVLNVNTGTVVANGTEVPPNPLDALGFSAVRFHPVHDSFVAVARRP CCCHHHHEEHHHCEEEEEECCCEEEECCCCCCCCCHHHCCCCEEEEEECCCHHHHHHCCC ASVSTFSVDAQQSRLQRHELVAHSSAINATKWSPAGDRLASAGDDGKVRLWGAAGQALAT CCCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCEEEE LDGHEGKSVRALGWDASGARLASGGADGRVCVWDAGTGRLTQPPLQMMQRAQGHTPKVEH ECCCCCCEEEEEECCCCCCEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEE VALSPDGRTLASAGATLFLTGSMTSVQVWDVASRTELLNIPETDSPVVALGWTPDSQSLI EEECCCCCCHHHCCCEEEEECCCCEEEEEECCCCCEEEECCCCCCCEEEEEECCCCCCEE IVYTHAAWDVWNRSSGVLKRVESAPEILTTAALSPDGTRLACSDRLGVSVLDVGTGAVVA EEEEECEEECCCCCHHHHHHHHCCCCEEEEEECCCCCCEEEECCCCCEEEEECCCCCEEE ETPMWMRQLSLAWHPDGTRFSGGGAYQLVFDWQVHEHGQLLPSVMGVHDSTVLGASWRGD CCCHHHHHEEEEECCCCCEECCCCEEEEEEEEEECCCCCHHHHHHCCCCCEEEECCCCCC GEVLTTGGADMALVTWRAR CCEEEECCCCEEEEEEECC >Mature Secondary Structure SRPPGQARIEAPVVGLTAGLPGGFRCIAEDPDGDALTYAFDWGRAKAEVSLSERVPSGT CCCCCCCEEECCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEHHHCCCCCC AGDVAPVFQTKGQFSARCRAVDTHGQLGAWSEYALFEVHPAPPLDDGKRELTVEVFGHGR CCCCCHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEECCE VTSTPSGIDCTSTCSARFEVGAEVTLSAEPQPGWRFTGLLRCGTERASQVVRVDHNYHCG EECCCCCCCCCCCCCEEEECCCEEEEECCCCCCCEEEEEEEECCHHHCCEEEECCCCCCC AGFARREEQAVEWRQTGASYPSDASWGPDGRLLAVLDQRGTRGGLRIWNAGLGQVARIIH CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCHHHHHHHHH QDSTDIRSVSWGPRDEDLAVGLADGRLALIDPATGALHQTWSAHAGPVVGLAWYARGNEL CCCCCCEECCCCCCCCCEEEEECCCCEEEECCCCCCHHHCCCCCCCCEEEEEEEECCCCE ASVSHPETGGAEVRFWAASSGTESRAPLRTARTLRKIHWSPDGARVALEMAGEQVEIHNL EECCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHEECCCCCCEEEEEECCCEEEEECC DPWVQVHEVGHGDSFSWSPDGARYAVGSYRNVRVYETATHELQASWFGPWSVSSRMDWSP CCCEEEEECCCCCCCCCCCCCCEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCC TQDWLVIVDLVHSLTVLNVNTGTVVANGTEVPPNPLDALGFSAVRFHPVHDSFVAVARRP CCCHHHHEEHHHCEEEEEECCCEEEECCCCCCCCCHHHCCCCEEEEEECCCHHHHHHCCC ASVSTFSVDAQQSRLQRHELVAHSSAINATKWSPAGDRLASAGDDGKVRLWGAAGQALAT CCCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCEEEE LDGHEGKSVRALGWDASGARLASGGADGRVCVWDAGTGRLTQPPLQMMQRAQGHTPKVEH ECCCCCCEEEEEECCCCCCEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEE VALSPDGRTLASAGATLFLTGSMTSVQVWDVASRTELLNIPETDSPVVALGWTPDSQSLI EEECCCCCCHHHCCCEEEEECCCCEEEEEECCCCCEEEECCCCCCCEEEEEECCCCCCEE IVYTHAAWDVWNRSSGVLKRVESAPEILTTAALSPDGTRLACSDRLGVSVLDVGTGAVVA EEEEECEEECCCCCHHHHHHHHCCCCEEEEEECCCCCCEEEECCCCCEEEEECCCCCEEE ETPMWMRQLSLAWHPDGTRFSGGGAYQLVFDWQVHEHGQLLPSVMGVHDSTVLGASWRGD CCCHHHHHEEEEECCCCCEECCCCEEEEEEEEEECCCCCHHHHHHCCCCCEEEECCCCCC GEVLTTGGADMALVTWRAR CCEEEECCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]