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The map label for this gene is rtcB [C]

Identifier: 108758274

GI number: 108758274

Start: 6755985

End: 6757478

Strand: Reverse

Name: rtcB [C]

Synonym: MXAN_5426

Alternate gene names: 108758274

Gene position: 6757478-6755985 (Counterclockwise)

Preceding gene: 108760423

Following gene: 108763804

Centisome position: 73.93

GC content: 68.67

Gene sequence:

>1494_bases
ATGTCTGAGCCCCCCTGTCATGAGGCAAGCATGGAGACACTTCCCGAGGTCCCGCAGCAGCTCGAGCCGCTCATCCGGCA
GATAGGGCCCGCCCTGTATGAACTGGGCCAGGGCTTCCGAGAGGACATGCGGGTACCGGCCCGCATCGTCGCGGACTCGG
AGTTGCTCCAGCAGATGGTCCAGGACCGGAGCGTGCCTCAGCTCGTCAATGTCACCACACTGCCGGGCATCCAGGGCTTC
GCCATCGGGATGCCGGACATGCACGAGGGCTACGGCTTCCCCGTGGGCGGCGTGGCGGGTACCGCGTTGCCGGATGGCGT
CATCTCGCCGGGCGGCATCGGGTTCGATATCAACTGCGGCGTGAGATTGCTGGCGACCGGGCTTCGGCACGAGGACGTGA
AGGAGGTCCTGCCGAAGGTGGCTCACGACCTCGCTCGGAGCATTCCCACAGGCTTCGGCCGGCATGGCCGCCTGTCGTTG
GCGCCCGAGCAGATGGATCGGGTCCTCACGGAGGGCGTCCCCTATCTGGTGGACGTGCTGGGACTGGGAACACCGGAGGA
CGTCGACTACCTGGAGGCCAGAGGCTGCCTCGATGGCGCCGACACAGCCAAGGTCTCTGTCCGGGCCCAGGAGCGGGGGC
ATGACCAGCTTGGAACGCTCGGTGGCGGCAACCACTTCCTGGAAGTGCAGCGGGTGGAGCGCGTCCTCGACTCGGAGGCG
GCCCCGGCGCTCGGGCTGTTCGAGGGCCAGCTCACCGTGCTCATCCATACGGGCTCGCGCGGACTGGGGCACCAGGTCTG
CACGGATGCGGTGCGCACCATGGACCGCGCCCTGGCCCGCGAGGGCATCCAGCTCGTGGACCGTCAACTCGCCTGTGCGC
CGCTGTCGTCGGCGGAGGGGCAGGACTACTTCGCGGCCATGTGCGCCGCGGCCAACTTCGCCTGGGCCAACCGGCAGGTG
CTCACCTACCGGGTGCGAGAGGTGTTCCGCCGGTGGTTCGGAGACCGTTCCGCTGCGTGGCCTCGCATCGTCTATGACGT
GGCCCACAACATCGCGAAGTTGGAGCCGCATGGAGGCCAGCGCCTCTGTGTACACCGCAAGGGCGCGACGCGGGCCTTCG
GTCCAGGGCACCCCGAGCTGCCCGCGGCCTACCATCAGGTCGGCCAGCCCGTGTTCATCCCCGGAAGCATGGGCACGGCG
TCGTTCGTGCTGGTGGGGAAGGAGGCTGCCGAGGCCATCTCACTCAGCAGCGCCTGCCATGGGGCGGGACGGCGGCTGAG
CCGGGCCGCTTCCAAACGCCAGGTGGTGGGAAGTGAGCTGCGCGCGGCGCTGAATCGTCAGGGCATCGCCGTGGAGTGTC
CCTCCAATGCGGAGCTCGCGGAGGAAGCACCCCTGGCCTACAAGGACGTGGATCGGGTGGTGGACGTGGTCGAGGCGGCT
GGCATCGCGCGGAAGGTGGCGCGGCTGGTGCCGCTCGCCGTGTTGAAAGGCTGA

Upstream 100 bases:

>100_bases
GTCTCGCCTCCTGTGCTGAAGACCGCTGTGAAGGCCGCCACCTTCCATGGCCTGGAGTTGCACGAGCACGACGACGGCTT
CACGGCCACGGTCGTCCTCG

Downstream 100 bases:

>100_bases
GCGCCGGGTTGCATTGGGCCGGAGGCGTGCGCTCACCGCGTCCAAGGAGGTTCCGCCGCCGTGCGGGGGAACCAGGGGCC
CTGAGGCCGCTCGTCGCTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 497; Mature: 496

Protein sequence:

>497_residues
MSEPPCHEASMETLPEVPQQLEPLIRQIGPALYELGQGFREDMRVPARIVADSELLQQMVQDRSVPQLVNVTTLPGIQGF
AIGMPDMHEGYGFPVGGVAGTALPDGVISPGGIGFDINCGVRLLATGLRHEDVKEVLPKVAHDLARSIPTGFGRHGRLSL
APEQMDRVLTEGVPYLVDVLGLGTPEDVDYLEARGCLDGADTAKVSVRAQERGHDQLGTLGGGNHFLEVQRVERVLDSEA
APALGLFEGQLTVLIHTGSRGLGHQVCTDAVRTMDRALAREGIQLVDRQLACAPLSSAEGQDYFAAMCAAANFAWANRQV
LTYRVREVFRRWFGDRSAAWPRIVYDVAHNIAKLEPHGGQRLCVHRKGATRAFGPGHPELPAAYHQVGQPVFIPGSMGTA
SFVLVGKEAAEAISLSSACHGAGRRLSRAASKRQVVGSELRAALNRQGIAVECPSNAELAEEAPLAYKDVDRVVDVVEAA
GIARKVARLVPLAVLKG

Sequences:

>Translated_497_residues
MSEPPCHEASMETLPEVPQQLEPLIRQIGPALYELGQGFREDMRVPARIVADSELLQQMVQDRSVPQLVNVTTLPGIQGF
AIGMPDMHEGYGFPVGGVAGTALPDGVISPGGIGFDINCGVRLLATGLRHEDVKEVLPKVAHDLARSIPTGFGRHGRLSL
APEQMDRVLTEGVPYLVDVLGLGTPEDVDYLEARGCLDGADTAKVSVRAQERGHDQLGTLGGGNHFLEVQRVERVLDSEA
APALGLFEGQLTVLIHTGSRGLGHQVCTDAVRTMDRALAREGIQLVDRQLACAPLSSAEGQDYFAAMCAAANFAWANRQV
LTYRVREVFRRWFGDRSAAWPRIVYDVAHNIAKLEPHGGQRLCVHRKGATRAFGPGHPELPAAYHQVGQPVFIPGSMGTA
SFVLVGKEAAEAISLSSACHGAGRRLSRAASKRQVVGSELRAALNRQGIAVECPSNAELAEEAPLAYKDVDRVVDVVEAA
GIARKVARLVPLAVLKG
>Mature_496_residues
SEPPCHEASMETLPEVPQQLEPLIRQIGPALYELGQGFREDMRVPARIVADSELLQQMVQDRSVPQLVNVTTLPGIQGFA
IGMPDMHEGYGFPVGGVAGTALPDGVISPGGIGFDINCGVRLLATGLRHEDVKEVLPKVAHDLARSIPTGFGRHGRLSLA
PEQMDRVLTEGVPYLVDVLGLGTPEDVDYLEARGCLDGADTAKVSVRAQERGHDQLGTLGGGNHFLEVQRVERVLDSEAA
PALGLFEGQLTVLIHTGSRGLGHQVCTDAVRTMDRALAREGIQLVDRQLACAPLSSAEGQDYFAAMCAAANFAWANRQVL
TYRVREVFRRWFGDRSAAWPRIVYDVAHNIAKLEPHGGQRLCVHRKGATRAFGPGHPELPAAYHQVGQPVFIPGSMGTAS
FVLVGKEAAEAISLSSACHGAGRRLSRAASKRQVVGSELRAALNRQGIAVECPSNAELAEEAPLAYKDVDRVVDVVEAAG
IARKVARLVPLAVLKG

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=496, Percent_Identity=41.7338709677419, Blast_Score=377, Evalue=1e-104,
Organism=Escherichia coli, GI2367224, Length=429, Percent_Identity=30.0699300699301, Blast_Score=150, Evalue=2e-37,
Organism=Caenorhabditis elegans, GI17506665, Length=506, Percent_Identity=42.8853754940711, Blast_Score=410, Evalue=1e-115,
Organism=Drosophila melanogaster, GI24585217, Length=495, Percent_Identity=43.6363636363636, Blast_Score=383, Evalue=1e-106,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 53264; Mature: 53132

Theoretical pI: Translated: 6.46; Mature: 6.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEPPCHEASMETLPEVPQQLEPLIRQIGPALYELGQGFREDMRVPARIVADSELLQQMV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
QDRSVPQLVNVTTLPGIQGFAIGMPDMHEGYGFPVGGVAGTALPDGVISPGGIGFDINCG
HCCCCCHHCCEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
VRLLATGLRHEDVKEVLPKVAHDLARSIPTGFGRHGRLSLAPEQMDRVLTEGVPYLVDVL
HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECHHHHHHHHHCCCHHHHHHH
GLGTPEDVDYLEARGCLDGADTAKVSVRAQERGHDQLGTLGGGNHFLEVQRVERVLDSEA
CCCCCCCHHHHHHCCCCCCCCCCEEEEEHHHCCCHHHCCCCCCCHHHHHHHHHHHHCCCC
APALGLFEGQLTVLIHTGSRGLGHQVCTDAVRTMDRALAREGIQLVDRQLACAPLSSAEG
CCCEEEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
QDYFAAMCAAANFAWANRQVLTYRVREVFRRWFGDRSAAWPRIVYDVAHNIAKLEPHGGQ
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCC
RLCVHRKGATRAFGPGHPELPAAYHQVGQPVFIPGSMGTASFVLVGKEAAEAISLSSACH
EEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEECCCCCCCEEEEEEHHHHHHHHHHHHHH
GAGRRLSRAASKRQVVGSELRAALNRQGIAVECPSNAELAEEAPLAYKDVDRVVDVVEAA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHCCCHHHHHHHHHHHHHHH
GIARKVARLVPLAVLKG
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SEPPCHEASMETLPEVPQQLEPLIRQIGPALYELGQGFREDMRVPARIVADSELLQQMV
CCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
QDRSVPQLVNVTTLPGIQGFAIGMPDMHEGYGFPVGGVAGTALPDGVISPGGIGFDINCG
HCCCCCHHCCEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
VRLLATGLRHEDVKEVLPKVAHDLARSIPTGFGRHGRLSLAPEQMDRVLTEGVPYLVDVL
HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECHHHHHHHHHCCCHHHHHHH
GLGTPEDVDYLEARGCLDGADTAKVSVRAQERGHDQLGTLGGGNHFLEVQRVERVLDSEA
CCCCCCCHHHHHHCCCCCCCCCCEEEEEHHHCCCHHHCCCCCCCHHHHHHHHHHHHCCCC
APALGLFEGQLTVLIHTGSRGLGHQVCTDAVRTMDRALAREGIQLVDRQLACAPLSSAEG
CCCEEEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
QDYFAAMCAAANFAWANRQVLTYRVREVFRRWFGDRSAAWPRIVYDVAHNIAKLEPHGGQ
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCC
RLCVHRKGATRAFGPGHPELPAAYHQVGQPVFIPGSMGTASFVLVGKEAAEAISLSSACH
EEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEECCCCCCCEEEEEEHHHHHHHHHHHHHH
GAGRRLSRAASKRQVVGSELRAALNRQGIAVECPSNAELAEEAPLAYKDVDRVVDVVEAA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHCCCHHHHHHHHHHHHHHH
GIARKVARLVPLAVLKG
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]