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The map label for this gene is ctpA [H]

Identifier: 108563722

GI number: 108563722

Start: 1341914

End: 1343293

Strand: Reverse

Name: ctpA [H]

Synonym: HPAG1_1297

Alternate gene names: 108563722

Gene position: 1343293-1341914 (Counterclockwise)

Preceding gene: 108563723

Following gene: 108563721

Centisome position: 84.15

GC content: 41.96

Gene sequence:

>1380_bases
GTGGTGCTATTAACAATGACAAAACGACTTTTTAAAGGGTTGTTAGCGATTTCTCTTGCTGTGAGTTTGCATGGTGGTGA
AGTTAAGGAAAAAAAGCCGGTCAAGCCGGTTAAAGAAGATCCGCAAGAATTAGCGGCTAAAAGGGTGGAGGCGTTCAGTC
GTTTCTCTAATGTGGTTACAGAAATTGAAAAAAAATATGTGGATAAAATCAGTATTTCTGAGATCATGACTAAAGCGATT
GAGGGCTTGCTCTCTAATTTGGACGCGCATTCAGCGTATTTGAATGAAAAGAAGTTTAAGGAATTTCAAGCCCAAACTGA
GGGCGAATTTGGGGGGCTTGGGATCACGGTGGGCATGCGCGATGGCGTTTTAACCGTGATCGCTCCTTTAGAAGGCACTC
CAGCTTACAAGGCTGGGGTTAAGTCAGGCGATAACATTTTAAAAATCAACAACGAAAGCACGCTGAGCATGAGCATTGAT
GATGCGATCAACCTCATGCGCGGCAAGCCAAAGACCCCTATTCAGATCACCATTGTGAGAAAAAACGAGCCAAAACCTTT
AGTGTTTAACATCATTAGAGACATCATTAAAGTCCCCTCTGTCTATGTGAAAAAGATTAAAGAAACCCCTTATTTGTATG
TGAGAGTCAACTCTTTTGATAAAAATGTTACCAAATCGGTTTTAGACGGCTTAAAAGCTAACCCTAAGGCTAAAGGGATC
GTGTTGGATTTAAGGGGGAATCCTGGAGGGCTATTAAACCAAGCAGTAGGCTTGTCTAACCTCTTCATTAAAGAGGGGGT
TTTAGTCTCTCAAAAAGGCAAAAATAAAGAAGAAAATTTAGAATACAAGGCTAATGGCAGAGCCCCTTATACCAATTTGC
CTATTGCGGTGTTAGTCAATGGCGGTTCAGCGAGCGCAAGCGAGATCGTAGCAGGGGCACTGCAAGATCACAAACGAGCC
GTGATTATCGGTGAAAAAACCTTTGGTAAGGGAAGCGTGCAGATTCTGCTCCCTGTCAATAAGGACGAAGCCATTAAAAT
CACGACTGCACGCTACTATTTGCCGAGTGGGCGCACCATTCAAGCTAAGGGGATCACGCCTGATATTGTGATTTATCCGG
GTAAAGTGCCAGAAAATGAAAACAAATTCAGCTTGAAAGAAGCGGATCTAAAACACCATTTAGAGCAAGAGCTTAAAAAA
CTTGACGATAAAAACCCCAATTCTAAAGAGGCGGATAAAGACAAGAAAAACGAAGAGGAAAAAGAGGTTACTCCTAAAAT
GATCAATGATGATATTCAGCTAAAAACCGCTATTGACAGCTTGAAAACCTGGTCTATCGTGGATGAGAAAATGGATGAAA
AAGCGCCTAAGAAGAAATAA

Upstream 100 bases:

>100_bases
ATGAGTGAATGAATGGGGCATGTTATCTAAATTTTAGATAGAATAAACGCAAAAAATTGAATAAAACCTTAAAGGTGATT
CTTTCTAATCTCAAAAATGG

Downstream 100 bases:

>100_bases
AAACTCATGGGGTTTTTATTTGAAAAATGATAAAACCATGTTTTAATTTTTAGGCGTTTTCAATGAAAACCATCGCAATC
GTTAGCTTGATTTTAAGCCT

Product: carboxyl-terminal protease

Products: NA

Alternate protein names: C-terminal-processing protease [H]

Number of amino acids: Translated: 459; Mature: 459

Protein sequence:

>459_residues
MVLLTMTKRLFKGLLAISLAVSLHGGEVKEKKPVKPVKEDPQELAAKRVEAFSRFSNVVTEIEKKYVDKISISEIMTKAI
EGLLSNLDAHSAYLNEKKFKEFQAQTEGEFGGLGITVGMRDGVLTVIAPLEGTPAYKAGVKSGDNILKINNESTLSMSID
DAINLMRGKPKTPIQITIVRKNEPKPLVFNIIRDIIKVPSVYVKKIKETPYLYVRVNSFDKNVTKSVLDGLKANPKAKGI
VLDLRGNPGGLLNQAVGLSNLFIKEGVLVSQKGKNKEENLEYKANGRAPYTNLPIAVLVNGGSASASEIVAGALQDHKRA
VIIGEKTFGKGSVQILLPVNKDEAIKITTARYYLPSGRTIQAKGITPDIVIYPGKVPENENKFSLKEADLKHHLEQELKK
LDDKNPNSKEADKDKKNEEEKEVTPKMINDDIQLKTAIDSLKTWSIVDEKMDEKAPKKK

Sequences:

>Translated_459_residues
MVLLTMTKRLFKGLLAISLAVSLHGGEVKEKKPVKPVKEDPQELAAKRVEAFSRFSNVVTEIEKKYVDKISISEIMTKAI
EGLLSNLDAHSAYLNEKKFKEFQAQTEGEFGGLGITVGMRDGVLTVIAPLEGTPAYKAGVKSGDNILKINNESTLSMSID
DAINLMRGKPKTPIQITIVRKNEPKPLVFNIIRDIIKVPSVYVKKIKETPYLYVRVNSFDKNVTKSVLDGLKANPKAKGI
VLDLRGNPGGLLNQAVGLSNLFIKEGVLVSQKGKNKEENLEYKANGRAPYTNLPIAVLVNGGSASASEIVAGALQDHKRA
VIIGEKTFGKGSVQILLPVNKDEAIKITTARYYLPSGRTIQAKGITPDIVIYPGKVPENENKFSLKEADLKHHLEQELKK
LDDKNPNSKEADKDKKNEEEKEVTPKMINDDIQLKTAIDSLKTWSIVDEKMDEKAPKKK
>Mature_459_residues
MVLLTMTKRLFKGLLAISLAVSLHGGEVKEKKPVKPVKEDPQELAAKRVEAFSRFSNVVTEIEKKYVDKISISEIMTKAI
EGLLSNLDAHSAYLNEKKFKEFQAQTEGEFGGLGITVGMRDGVLTVIAPLEGTPAYKAGVKSGDNILKINNESTLSMSID
DAINLMRGKPKTPIQITIVRKNEPKPLVFNIIRDIIKVPSVYVKKIKETPYLYVRVNSFDKNVTKSVLDGLKANPKAKGI
VLDLRGNPGGLLNQAVGLSNLFIKEGVLVSQKGKNKEENLEYKANGRAPYTNLPIAVLVNGGSASASEIVAGALQDHKRA
VIIGEKTFGKGSVQILLPVNKDEAIKITTARYYLPSGRTIQAKGITPDIVIYPGKVPENENKFSLKEADLKHHLEQELKK
LDDKNPNSKEADKDKKNEEEKEVTPKMINDDIQLKTAIDSLKTWSIVDEKMDEKAPKKK

Specific function: Involved in protection of the bacterium from thermal and osmotic stresses (Potential) [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=331, Percent_Identity=28.0966767371601, Blast_Score=125, Evalue=7e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 50604; Mature: 50604

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLLTMTKRLFKGLLAISLAVSLHGGEVKEKKPVKPVKEDPQELAAKRVEAFSRFSNVVT
CEEEHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
EIEKKYVDKISISEIMTKAIEGLLSNLDAHSAYLNEKKFKEFQAQTEGEFGGLGITVGMR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC
DGVLTVIAPLEGTPAYKAGVKSGDNILKINNESTLSMSIDDAINLMRGKPKTPIQITIVR
CCEEEEEECCCCCCCHHHCCCCCCCEEEECCCCEEEEEHHHHHHHHCCCCCCCEEEEEEE
KNEPKPLVFNIIRDIIKVPSVYVKKIKETPYLYVRVNSFDKNVTKSVLDGLKANPKAKGI
CCCCCCHHHHHHHHHHHCCHHHHHHHCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCEE
VLDLRGNPGGLLNQAVGLSNLFIKEGVLVSQKGKNKEENLEYKANGRAPYTNLPIAVLVN
EEEECCCCCHHHHHHHCHHHHHHHCCEEEECCCCCCCCCCEEEECCCCCCCCCCEEEEEE
GGSASASEIVAGALQDHKRAVIIGEKTFGKGSVQILLPVNKDEAIKITTARYYLPSGRTI
CCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEEEEEECCCCCEE
QAKGITPDIVIYPGKVPENENKFSLKEADLKHHLEQELKKLDDKNPNSKEADKDKKNEEE
EECCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCHH
KEVTPKMINDDIQLKTAIDSLKTWSIVDEKMDEKAPKKK
HHCCHHHHCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MVLLTMTKRLFKGLLAISLAVSLHGGEVKEKKPVKPVKEDPQELAAKRVEAFSRFSNVVT
CEEEHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
EIEKKYVDKISISEIMTKAIEGLLSNLDAHSAYLNEKKFKEFQAQTEGEFGGLGITVGMR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC
DGVLTVIAPLEGTPAYKAGVKSGDNILKINNESTLSMSIDDAINLMRGKPKTPIQITIVR
CCEEEEEECCCCCCCHHHCCCCCCCEEEECCCCEEEEEHHHHHHHHCCCCCCCEEEEEEE
KNEPKPLVFNIIRDIIKVPSVYVKKIKETPYLYVRVNSFDKNVTKSVLDGLKANPKAKGI
CCCCCCHHHHHHHHHHHCCHHHHHHHCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCEE
VLDLRGNPGGLLNQAVGLSNLFIKEGVLVSQKGKNKEENLEYKANGRAPYTNLPIAVLVN
EEEECCCCCHHHHHHHCHHHHHHHCCEEEECCCCCCCCCCEEEECCCCCCCCCCEEEEEE
GGSASASEIVAGALQDHKRAVIIGEKTFGKGSVQILLPVNKDEAIKITTARYYLPSGRTI
CCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEEEEEECCCCCEE
QAKGITPDIVIYPGKVPENENKFSLKEADLKHHLEQELKKLDDKNPNSKEADKDKKNEEE
EECCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCHH
KEVTPKMINDDIQLKTAIDSLKTWSIVDEKMDEKAPKKK
HHCCHHHHCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9141685 [H]